Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0759 ATGGGAAGGACACCATGTTGTGACAAGAAGGGTTTGAAGAAAGGACCTTGGACagctgaagaggatgaaattctTGCTAGTTATATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAGGATGGCAGGTCTTCTTCGTTGTGGCAAGAGTTGCAGGCTTAGGTGGACCAACTATCTTAGACCTGACATTAAGCGTGGTCCCTTTACTCTTGAGGAAGAAAAACTAGTCATACAGCTTCATGGCATCCTAGGAAATAGGTGGGCTGCAATTGCCTCTCAGTTACCAGGAAGAACAGACAATGAGATAAAGAACTTATGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGGCTTGACCCCAAAACCCACGAGCCATTGGCCTCATCCTCATCTTACCCCTTTCACAAGGCACATGCATCTGTCTCCACACGCCACATGGCTCAGTGGGAGAGTGCCAGGCTCGAAGCTGAGGCCAGGCTCTCAAACGAGTCATCAAGGTTCACCCACACATCCAATCCTAATAACAATTCCTTTGCAGATGACAAAGCCACCGACTCTGACTACTTCCTCCGCATTTGGAACTCTGAAGTTGGAGAGGCATTTCGCAATGTTCACCATCACAAAGCCGATGATGATAACAAAATCACTGGCTCCTGCCACAGTCCCCTCTCTGCGGGATCATCTTCCAACAAGTGTGAGTCGGTTGCAACAAATGCAGAGTTGGCTTCTAATGCGCAAGGAACACCCTCAAACACTGTGAAACAAGAGATGGAGTGGAAGACTCGTGGATCTGACTCGTCAAGCTCTAATGACATGGAAGATTCATCAGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAGACAATGACATGAGCTTCTTAGAAGGAAACTCTTTCGTGTGTCCACTTTAA 927 0.4606 MGRTPCCDKKGLKKGPWTAEEDEILASYIKKNGGHGSWRSLPRMAGLLRCGKSCRLRWTNYLRPDIKRGPFTLEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKSMGLDPKTHEPLASSSSYPFHKAHASVSTRHMAQWESARLEAEARLSNESSRFTHTSNPNNNSFADDKATDSDYFLRIWNSEVGEAFRNVHHHKADDDNKITGSCHSPLSAGSSSNKCESVATNAELASNAQGTPSNTVKQEMEWKTRGSDSSSSNDMEDSSDTALQLLLDFPIDNDMSFLEGNSFVCPL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0759 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Ssu3g0759 308 Gene3D - 11 68 - -
Ssu3g0759 308 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Ssu3g0759 308 MobiDBLite consensus disorder prediction 164 185 - -
Ssu3g0759 308 MobiDBLite consensus disorder prediction 167 185 - -
Ssu3g0759 308 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Ssu3g0759 308 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu3g0759 308 CDD SANT 16 62 IPR001005 -
Ssu3g0759 308 Gene3D - 69 135 - -
Ssu3g0759 308 MobiDBLite consensus disorder prediction 245 280 - -
Ssu3g0759 308 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu3g0759 308 PANTHER PROTEIN ODORANT1-LIKE 1 302 - -
Ssu3g0759 308 CDD SANT 70 113 IPR001005 -
Ssu3g0759 308 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Ssu3g0759 308 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 302 - -
Ssu3g0759 308 SMART sant 67 115 IPR001005 -
Ssu3g0759 308 SMART sant 13 64 IPR001005 -
Ssu3g0759 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0759 Ssu-Chr3 18227859 18230184 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0759 1 302 MYB Transcription Factor Family AT3G61250 64.052 1.14e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g0759 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0759 K09422 - gmx:100800408 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0759 3 18227859 18230184 Ssu4g2761 4 70560972 70564588 PCT