Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0757 ATGAACAATAGAGAGAGGATGAACAATAGGGAGAGATACCCGCCTGGGATGGGGTTTCAACCGAGGCCGCATCAGCATCAGTATGTGCAGAGGCACATGGTGCATCAGTATCAACagaatcatcatcatcatcatcatcatcatcaacaacaacaacaacaacaacagcatcaGCAGCAACAACAGTGGTTGAGAAGGAACCAGTTAGGTGGTGGGACCGACACCAGCGTTGTTGTTGAGGAGGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACTCAagTTCACAAGATTGGAAGGCAAGACTAAAGATTCCACCAGCTGATACACGCTATAAGACAGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGCGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCATCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACGGCTGCGTTTTGTATTCCTGCATTGGAAAAAATTGATCAGGACAGTAATGTTATTCAAGTTGTAATATTGGTCCCAACACGAGAACTGGCTTTGCAAACATCTCAGGTGTGCAAAGAGCTTGGAAAACATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCTTGAAAGATGATATTATGCGTTTATATCAACCCGTTCATCTGCTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGCGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCAGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTGCAAACCGTCAGATACTTATGTTTTCAGCTACATTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCATAAGCCATACATCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCAATCATCTTCTGCAATTCCGTGAATCGGGTTGAACTTCTCGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATGTTGCAAGACCACCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCCTGCAGAAATCTTGTTTGTACTGATCTTTTCACTAGGGGAATAGACATCCAAGCAGTCaatgttgttattaattttgattttccaaAGAACTCAGAAACTTATCTGCACAGGGTGGGTCGTTCAGGGAGGTTTGGGCACCTAGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAACTAGGCactgaaataaaacaaattccACCCCACATTGATCAAGCAATATATTGCCGGTGA 1491 0.391 MNNRERMNNRERYPPGMGFQPRPHQHQYVQRHMVHQYQQNHHHHHHHHQQQQQQQQHQQQQQWLRRNQLGGGTDTSVVVEEVEKTVQSEAVDSSSQDWKARLKIPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDSNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPANRQILMFSATFPVTVKDFKDRYLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0757 496 CDD SF2_C_DEAD 334 463 - -
Ssu3g0757 496 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 493 IPR001650 -
Ssu3g0757 496 Pfam DEAD/DEAH box helicase 147 311 IPR011545 GO:0003676|GO:0005524
Ssu3g0757 496 Pfam Helicase conserved C-terminal domain 348 454 IPR001650 -
Ssu3g0757 496 Gene3D - 80 326 IPR027417 -
Ssu3g0757 496 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 16 496 - -
Ssu3g0757 496 Gene3D - 327 496 IPR027417 -
Ssu3g0757 496 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 16 496 - -
Ssu3g0757 496 MobiDBLite consensus disorder prediction 36 51 - -
Ssu3g0757 496 MobiDBLite consensus disorder prediction 1 63 - -
Ssu3g0757 496 CDD DEADc_DDX6 124 324 - -
Ssu3g0757 496 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Ssu3g0757 496 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 323 IPR014001 -
Ssu3g0757 496 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Ssu3g0757 496 SMART helicmild6 373 454 IPR001650 -
Ssu3g0757 496 SMART ultradead3 141 337 IPR014001 -
Ssu3g0757 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 476 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0757 Ssu-Chr3 18190795 18196045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0757 122 493 Eukaryotic Initiation Factors Gene Family AT3G19760 38.503 3.97e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0757 K12614 - tcc:18614173 863.988