Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0749 ATGGATCGTGGGGACCAAATGGCGTTATCTGGGTCTTACTATATGCAGCAAAGAGGAATACCTGGATCTGGAGCACAACCTGAGTTACATGTTTCACCTAATATTCGTCCACTGTCTAATCCGAATCTACCATTTCAATCCAGCATTGGTGGTGGTACCATTGGATCCACATTACCATTAGAATCTTCGGCAATTTCGGCTCATGGTGTGAGTGTGGGAGCTCCTACTGGGGCACCTCCTGGGGAACCTGTCAAGAGGAAGAGAGGAAGGCCTAGGAAATATGGCACTGATGGAACTGTGTCATTGGCATTGACTCCAACTCCAACATCATCTAGTCATCCTGGAGCCTTGACACAAAGCCAGAAACGGGGCAGAGGGCGCCCGCCCGGGACTGGGAAAAAACAGCAACTGGCTTCCCTCGGTGAATTGATGTCTGGTTCAGCTGGGATGGGATTCACTCCTCATGTCATCAACATTGCAAGTGGAGaaGACATTGCAACAAAAATCATGGCATTTTCTCAGCAGGGACCTAGAGCTGTATGCATTTTGTCAGCCAATGGTGCTGTCTCAACTGTCACACTTCGTCAGCCATCAACTTCAGGTGGCACTGTCACATACGAGGGGCGCTTCGAGATAGTGTGCCTGTCAGGCTCTTACTTGGTCACCGATGGTGGCGGCTCACGCAATCGAACTGGTGGACTGAGTGTGTCCCTTGCTAGTCCTGATGGTCGTGTCATTGGTGGCGGAGTTGGTGGAGTGCTTATTGCATCAAGTCCTGTTCAGGTGGTAGTTGGGAGCTTTGTATGGGGTGGATCCAAGgcaaagaacaagaaaaaggaaagcTCAGAAGGTGCAGTTGCTGTGGAGTCAGATCATCAGGGAGTTCATAATCCAGTGGCACTGAATAGCATCTCACCAAATCAAAACCTTACTCCAACCCCCCCATCTTTAAGTCCTTGGTCGGCATCGCGTCCGTTGGATATGCGCAATTCCCATGTCGACATTGATTTAATGCGTGGGTGA 1023 0.4897 MDRGDQMALSGSYYMQQRGIPGSGAQPELHVSPNIRPLSNPNLPFQSSIGGGTIGSTLPLESSAISAHGVSVGAPTGAPPGEPVKRKRGRPRKYGTDGTVSLALTPTPTSSSHPGALTQSQKRGRGRPPGTGKKQQLASLGELMSGSAGMGFTPHVINIASGEDIATKIMAFSQQGPRAVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIVCLSGSYLVTDGGGSRNRTGGLSVSLASPDGRVIGGGVGGVLIASSPVQVVVGSFVWGGSKAKNKKKESSEGAVAVESDHQGVHNPVALNSISPNQNLTPTPPSLSPWSASRPLDMRNSHVDIDLMRG 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0749 340 CDD DUF296 153 267 IPR005175 -
Ssu3g0749 340 Gene3D - 154 289 - -
Ssu3g0749 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 308 IPR039605 GO:0003680
Ssu3g0749 340 MobiDBLite consensus disorder prediction 100 119 - -
Ssu3g0749 340 SMART AT_hook_2 122 134 IPR017956 GO:0003677
Ssu3g0749 340 SMART AT_hook_2 85 97 IPR017956 GO:0003677
Ssu3g0749 340 MobiDBLite consensus disorder prediction 1 43 - -
Ssu3g0749 340 MobiDBLite consensus disorder prediction 305 325 - -
Ssu3g0749 340 MobiDBLite consensus disorder prediction 70 136 - -
Ssu3g0749 340 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 268 IPR005175 -
Ssu3g0749 340 ProSiteProfiles PPC domain profile profile. 148 289 IPR005175 -
Ssu3g0749 340 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 308 - -
Ssu3g0749 340 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0749 Ssu-Chr3 18091865 18097097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0749 1 340 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 49.584 3.22e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0749 - - gmx:100814615 592.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0749 3 18091865 18097097 Ssu3g0749 3 18091865 18097097 ECH
Ssu3g0749 3 18091865 18097097 Ssu4g2774 4 70780695 70788586 PCT