Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0731 ATGTCTCTATTTGCTAGAAGTGTTTCCACACTTTGGGTGCTGATGTTGTTATTATCGTCGGCAAACAATGCTATGGCAGTTGTTAGGGTCACAAATTCTCTGGATGGGAATCTGGACTTAACCATTTATTGCAACAATATTGATCCTTTACCTCACCGTATCCGCCCTGGTACTTCCTATGAATTGAACTATTCTGGTGGTAGCCAACCTGGAAAgccaccattcttttgtttctttcaatGGCAAGGTGCCTTTCACTCATTTGATATGTGCGTGCCACGTCAGGGAGGCGGTTGCCAACAGTGCAATTGGCTTATAAAACAAGCTGGACCATGTAGGTATGAGGGTACCCATTATATTTGCGCTAgctggaaataa 378 0.3995 MSLFARSVSTLWVLMLLLSSANNAMAVVRVTNSLDGNLDLTIYCNNIDPLPHRIRPGTSYELNYSGGSQPGKPPFFCFFQWQGAFHSFDMCVPRQGGGCQQCNWLIKQAGPCRYEGTHYICASWK 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0731 125 PANTHER LEGUMINOSIN GROUP486 SECRETED PEPTIDE 19 119 - -
Ssu3g0731 125 Pfam Plant self-incompatibility protein S1 28 124 IPR010264 -
Ssu3g0731 125 PANTHER - 19 119 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0731 Ssu-Chr3 17623474 17623851 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0731 19 113 Carbohydrate Esterase AT3G16970 31.132 2.40e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0731 - K22913 pvu:PHAVU_008G063300g 181.8