Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0729 ATGTCTCTATTTGCTAGAAGTGTTTTCATACTATGGGTGCTTATGGCTGTTTTGTCGTTGGCAAACAATGCTATGGCAGCAAATTCAAATGTTGTTATTACAGCCACAAATTCTTTGGATGGAAATTTGGAATTAAACGTCCAATGTCCCAATTTTGATCCTGAACAGCACACTCTTGCCCCTGCTACTTCTTATGAATGGATTTATTCTGGTGGTGTTCCATCTAGAAAGTCaccattcttttgtttctttcgATGGCAAGGTGCCTCTCACTCGTTTGATATGTGCACGCCAAATAAGGACACCGGTTGCCAACAGGTCACTTggtatataaaacaaaatggaCCATGTAGGTACTTTGGTCACGGAGCTGGGAATTATAATTGCTTTAaatggaattaa 402 0.3607 MSLFARSVFILWVLMAVLSLANNAMAANSNVVITATNSLDGNLELNVQCPNFDPEQHTLAPATSYEWIYSGGVPSRKSPFFCFFRWQGASHSFDMCTPNKDTGCQQVTWYIKQNGPCRYFGHGAGNYNCFKWN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0729 133 Pfam Plant self-incompatibility protein S1 35 132 IPR010264 -
Ssu3g0729 133 PANTHER - 21 132 IPR010264 -
Ssu3g0729 133 PANTHER S-PROTEIN HOMOLOG 18-RELATED 21 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0729 Ssu-Chr3 17579146 17579547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0729 28 133 Carbohydrate Esterase AT3G16970 25.641 1.07e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0729 - K20888 gmx:102668321 145.591