Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0727 ATGTCTCTGTTTGTCAAAAGCATTTTCTTACTGTTCGTGTTTACGTTGGTATCGGAGAGACATGTTCTTGCAAAAACACATGTGTCTATCACTAATAATCTGGAGGAAAATCAAGATCTAAACCTTCACTGCAAATCTGCAGATGATGATCTTGGAATGCAAGTTCTCCACTTTAATCAAACCTTTGCATGGAGTTTTGGGGTTAGCGTTTTCTGGAACACACAATTCTATTGTTCGTTTCTATGGAAAAATGCTCCTATAGTGCATTATGATATGTACATAGCAACTAGGGATGAGTCCGTATGCAAAGTGTGCAATTGGTACATTAAGGAAGGCGGACCATGTAGGTACGTATTGGGTAGCGTGGTTTGCATAAGGGTGACAATGAGTCTTGTGAGCATGGTGGTGGAGCAGTGGTCTATGTTGACCATGCTACTGGTGCGACCTTGGATACATAAGAAGTCTTGTTGCAGTCCAGTAGTCTTTGTTGGGCACGGTTCTTAA 504 0.4147 MSLFVKSIFLLFVFTLVSERHVLAKTHVSITNNLEENQDLNLHCKSADDDLGMQVLHFNQTFAWSFGVSVFWNTQFYCSFLWKNAPIVHYDMYIATRDESVCKVCNWYIKEGGPCRYVLGSVVCIRVTMSLVSMVVEQWSMLTMLLVRPWIHKKSCCSPVVFVGHGS 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0727 167 PANTHER LEGUMINOSIN GROUP486 SECRETED PEPTIDE 17 119 - -
Ssu3g0727 167 Pfam Plant self-incompatibility protein S1 27 117 IPR010264 -
Ssu3g0727 167 PANTHER - 17 119 IPR010264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0727 Ssu-Chr3 17519458 17522049 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0727 24 116 Carbohydrate Esterase AT3G16970 38.144 7.88e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0727 - - pvu:PHAVU_008G062900g 137.887