Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0725 ATGTCTTTGTTTACCGAAAGTGTTCTCTTACTGTTCGTGTTCATGTTGCTATCGGCGAGCAATATTCTTGGAAAAACACATGTATCTATTACGAATGATCTGGAGGGAAAACAAGATCTAGTTGTTCACTGCAAATCCGCAGATGATGATCTTGGAGTGCATTTTCTCCAATTTAATCATTCCTTTGGATGGAGATTTGGGATTAGCATCTTTAGGAACACACAATTCTATTGTTCCTTTCGATGGAAAAATGCTCCTTTAGTGTGGTATGATGTATACATCAAATCTAGGGATAACCCAATATGTGAAGAGTGCAATTGGTATATTAGGCAAGGTGGACCATGTAGGTATACTGAAGGGAGTTACCCGACTGGGcaATACCTGGAGCAACGACGCCATGGCCAAGATGTGATGGAGTTCCTGTGCGAAAAAGGAACCTTGGAGAAGAAGATCGACCATGGAAGGGTGGGGAATAAGAGGGGACAAAAAAGAGGTCGTACAAAGAGCATGGAGAAGGACTTGCAACACCGGTGGTGGATGCGAATGGCGAATGTTGTGGTGAGCATAGCTGAGAAATGA 579 0.4283 MSLFTESVLLLFVFMLLSASNILGKTHVSITNDLEGKQDLVVHCKSADDDLGVHFLQFNHSFGWRFGISIFRNTQFYCSFRWKNAPLVWYDVYIKSRDNPICEECNWYIRQGGPCRYTEGSYPTGQYLEQRRHGQDVMEFLCEKGTLEKKIDHGRVGNKRGQKRGRTKSMEKDLQHRWWMRMANVVVSIAEK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0725 192 PANTHER - 17 122 IPR010264 -
Ssu3g0725 192 Pfam Plant self-incompatibility protein S1 27 121 IPR010264 -
Ssu3g0725 192 PANTHER LEGUMINOSIN GROUP486 SECRETED PEPTIDE 17 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0725 Ssu-Chr3 17481641 17499929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0725 25 121 Carbohydrate Esterase AT3G16970 40.594 9.45e-19 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0725 - - pvu:PHAVU_008G062900g 129.798