Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0719 ATGGCAAAGAGGTCCCAAAGATTCCCTGTGAATTACGAGAGAGATCAGTCAGGATGTATGTGGGGTTTGATTAGTATATTTGATTTTCGCCATGGCCGCTTCACTCGGAAGTTGATAGCAGATAAGAGGCATGGCAGCAAGCATGCTGTTGGTGCTGCAGTTACCAAGAACAAGTTTGAAGCATTGAGCAATTTGGATGAAGAATATCAAGGCAATTTTAACAGAGGAGAGAGTAAGAGACTAATGCCGACAACTGATGCTGATAAGCTTAGTGTGAAGAAACTCATAGAAGAAGAGATGATCATTGACCAGGATGAAATAAAGGATCAAGGTAATGCTGAAGTAGAATCAAAACAATCCAGATTAGGGTGTGAAGACCCTCCAAAGACAgattccaaaagaaaaaagaaatcttgCAAGAAAAACCGTGATATGGACAGCCATGATGTGAATTTGGATGCAACCTTGAAATCTGAATTTCCACATAACCAGCATTCAAGGCAACAGTCGAAAGATAATCTAGATTTGGACAAAATAATGGATGATTTTTGTCATGTTGAAGCTGCTTGTTCCATGATGCATGATGATGATGGCAAAATTAATGCACAGTCAGACAAAAAGCATGTTATCTCTGAAAACCTTGCTAATGCAATCCATGAATTTGTGAATCAGATGATATTGAATGGGAAAGATCTGCCTGAAGATGGACAATTCCTTAGCTCACGCGAACTCATGGAAGCACTTCAGGTTATAAGTTCAGATAAGCAATTATTTGTTAGACTTCTACAAGACCCAAATTCACACCTATTGAAATACATTCAGGAGTTGGAGAATGTTCAAGGGAAAGGTGGCAAAGAATGCAGTTCAGTTACTGGCTCCAACTGTTCTGAACAAGAACTTGTTAATCTGAAACAAACTAGAGAGATTGCCAACCGCAAGCATCGTAGCTTTTTCAGGAAAAGGGTGAAGTCTCAATCAAAAGATCCAACAAATGAAAATGGGAAAACTGAGTTTTCAAATAGAATTGTCATTCTGAAACCTGCACTAACAGGCATGCCAATTTCTGAAAGTGGAAACAACCTTGCCTCATCCCTAGATTCTCATGATATTGCCCATTACAAAGGTCCTTCTGTGAGAGTTGGTTCACATTTTTCTCTTACagagataaaaaggaaattgaaaCATGCTATGGGAAAGGAGAGGCATGGAAACCCTGAAGTGATCTCACAAAAACTCCTTGTTGAACGTCAAAATAAGGTCCCAAGAGGCAAATCCATTGGTAAAGATAATGCTGGAATGAGATCGCCTAATAAAGACCATTTCTTCATTGAAAAAATTGCAAGACCTATGTTTGATGTTGTGAAAGGAAACAAGACTGGTACACTGAAAGACTCTGAATTGAATGTGGAACATGAAAGTGGTACTCCCATACAAAGAGTTTCTAACATATATATTGAGGCTAAGAAACATCTGTGTGAGATGCTAGATAGTGCTGATGAGAACACAAACATTTCAAGCAGGCAGATTCCCAAAACCCTTGGGAGAATACTTTCTCTTCCTGAGTACAACTTTTCTCCTCTAGAAAGTCCCGGAAGGGATTTGGAGAATCATGTTGTGACTGCACAGGCAAGATTTTCTTCCTCAGACAAAACTAGGGAGGTTAGTGAGGATATTTTGTCCCCCAAACCAGCAACCTTTATTGGTCTTCCAGATCAGGAAACTAACAATTCAGAGAAACAGTCAAGCATTTGTGATGAAAGCTCTAATAATAAAGTCCAAGAAATCAAGTCAGTGTCAAATTTCTCCCATGATGTTGGTCATGTTGATATATCCAAAACCTGTTGTCCTGTTAGAGATGAGATAGTTACTGAAGAATCTACAGAAGAGAAAAATGATTTGGAATCATCTTTGGATCCAAATGGCTTCATCACagaaaaggaccaaaatattgATATCTCAGAAATTCCTGATGGTGCAGGATGTTCTGAATGTTTGAATCAGGACATAACAGAAGAGAACCAACTGTCATCTCCTCACTCTTTCATCactaagaaaaatgaagagctAGAAAGTGGTACAGATGTATCTGGGCGACCGAGTCCTGTATCTGTTCTTGATACATCATTCTCAGATGATGACTTTGGCCCCAGGCACTCTAAATGTCAACCCGttAAATTACCAGTACGACCTCTACAAATTCAATTTGAAGAACATGACTCTTCACCTGCGGAACAATTTGACAGAGGAAAATATTGTCTTGAAGAAAGTGAAGTGATATATGACTACATCAAAGCTGTCTTGCATGCCTCTGGTTTGACTAGAGATCAGTTGTTGATGAAATGCCTTTCCTCAGACAAGATACTAGATCCTTCCTTGTTTGATCGGGTAGAGTTCTTCTCGAGCCTGCTTTGCCACGACCAGAAGCTCCTATTTGACTCTATCAACGAAGTTCTCATGGAGATTTGTGAGCATTACTTTGGGGTCTCACCTTGGGTATCATTTGTAAATCCTGGCATGAGGCCAGCTCCAAATATGAAAAGGGTTACTTTCAAGGTCTGGGAAGGAGTGTGCTGGCATGTCCTTCCCCTGCCCCCACTGCGTACTTTAGAGCAAATTGTTAGGAAAGACATGGAAAGAAATGGAACGTGGATGGACCTTGGACTTGACGCGGAAACAATTGGTTTTGAAATGGGGGAGGACATTCTTGCTGAACTGATGGAAGAAACAATGTTGAGCCTTGTGAGTGAAAGTCCGGAAAGTAAATGTTCTCTGCTTCAATTTGAGTTGAAGGACAATGAGAGCAGCTTCCACTTGTAA 2817 0.3919 MAKRSQRFPVNYERDQSGCMWGLISIFDFRHGRFTRKLIADKRHGSKHAVGAAVTKNKFEALSNLDEEYQGNFNRGESKRLMPTTDADKLSVKKLIEEEMIIDQDEIKDQGNAEVESKQSRLGCEDPPKTDSKRKKKSCKKNRDMDSHDVNLDATLKSEFPHNQHSRQQSKDNLDLDKIMDDFCHVEAACSMMHDDDGKINAQSDKKHVISENLANAIHEFVNQMILNGKDLPEDGQFLSSRELMEALQVISSDKQLFVRLLQDPNSHLLKYIQELENVQGKGGKECSSVTGSNCSEQELVNLKQTREIANRKHRSFFRKRVKSQSKDPTNENGKTEFSNRIVILKPALTGMPISESGNNLASSLDSHDIAHYKGPSVRVGSHFSLTEIKRKLKHAMGKERHGNPEVISQKLLVERQNKVPRGKSIGKDNAGMRSPNKDHFFIEKIARPMFDVVKGNKTGTLKDSELNVEHESGTPIQRVSNIYIEAKKHLCEMLDSADENTNISSRQIPKTLGRILSLPEYNFSPLESPGRDLENHVVTAQARFSSSDKTREVSEDILSPKPATFIGLPDQETNNSEKQSSICDESSNNKVQEIKSVSNFSHDVGHVDISKTCCPVRDEIVTEESTEEKNDLESSLDPNGFITEKDQNIDISEIPDGAGCSECLNQDITEENQLSSPHSFITKKNEELESGTDVSGRPSPVSVLDTSFSDDDFGPRHSKCQPVKLPVRPLQIQFEEHDSSPAEQFDRGKYCLEESEVIYDYIKAVLHASGLTRDQLLMKCLSSDKILDPSLFDRVEFFSSLLCHDQKLLFDSINEVLMEICEHYFGVSPWVSFVNPGMRPAPNMKRVTFKVWEGVCWHVLPLPPLRTLEQIVRKDMERNGTWMDLGLDAETIGFEMGEDILAELMEETMLSLVSESPESKCSLLQFELKDNESSFHL 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0719 938 MobiDBLite consensus disorder prediction 106 133 - -
Ssu3g0719 938 Pfam Domain of unknown function (DUF4378) 761 908 IPR025486 -
Ssu3g0719 938 Pfam Protein of unknown function (DUF3741) 223 267 IPR022212 -
Ssu3g0719 938 PANTHER ADHESIN-LIKE PROTEIN, PUTATIVE (DUF3741)-RELATED 1 923 - -
Ssu3g0719 938 MobiDBLite consensus disorder prediction 106 150 - -
Ssu3g0719 938 PANTHER (, RELATED) 1 923 - -
Ssu3g0719 938 Coils Coil 293 313 - -
Ssu3g0719 938 MobiDBLite consensus disorder prediction 562 588 - -
Ssu3g0719 938 MobiDBLite consensus disorder prediction 623 643 - -
Ssu3g0719 938 MobiDBLite consensus disorder prediction 569 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0719 Ssu-Chr3 17344607 17348650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0719 1 896 TRM (TON1 Recruiting Motif) Superfamily AT4G00440 32.751 1.57e-107 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0719 - - gmx:100783243 1565.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0719 3 17344607 17348650 Ssu3g0719 3 17344607 17348650 ECH
Ssu3g0719 3 17344607 17348650 Ssu4g2794 4 71281492 71285449 PCT