Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0717 ATGGCTGTGGTGAGTCCTGAGCCTGCAACAACACAAAGGATGGGTTCTGTGAGGTCAACTTCTGATGCTGGTGGAGAAATTTTGGAGGAGCCTAATCCAAGTGTGGTTGATCAGCCGATCTATGTTGCTGTGACAAAAGAGGTGAAGGAGAGCAAATCAAATCTGATATGGGCAATACAGCACTCTGGGGGAAGGAGGATTTGCATTCTTCATGTTCATGTTCCTGCTACAATGATCCCcctatTGGGAGGTAAATTCCCTGCAAGTAAACTAAAACAGGAGCAGGTTCAAACATTCTGGGAAGATGAAAGGCAAGGCATGCATAGGACTCTGGATGAATATCTACATATCTGTCACCGGATGGGGATGCGAGCAGAGAAGCTGCATATTGAAATGGATAGCATTGAAAAAGGAATTTTAGAACTTGTCTCCAGGCATGGTATCCGAAAGCTTGTTATGGGAGCAGCATCTGATAGGTACTATACTAGGAAAATGATGGACCTCAGATCTAAGAAAGCCATCTATGTGTGTAGAGAAGCTCCAGCTTCTTGTCATATACTGTTTGTCTGCAAAGGGCACCTTATACACACAAGGGATCGTAGTTTGGATGAAGGTAATGCAGAGGTTGCATCTCCTTTAGTGCAGCAAGTGCCAAACTCTGAGAGATCTTTGAGATCTCAGTCTATTACACTGGGGCAAGATCATCGAACAAATCTAACAAATCCTGCTCTAGATTTATTACGCAGAGTAAGGTCTGCCAATGATGGACATAGAGCGAGCTTTTTGGCTGCTTCATCTCCAGAAGACACCGAAGGGTTTTCAACTCCACGTGACAGGATGGGTACAGAAGTAAGTTCTGATGAATCAGATAGGCTGTCAAGGATGAGTCCTTCTGGCTTATCAACATGCTCTGACAGTGCAGTTGAACTAGCATTGACCCCAAATTTGATTACTGAAAGTAGTGAGAATGCATTTGAGTTGACTTTGAGTCGCCTGATTATAGAGGATCTTAATCATTCATCTCCTCCTAGTACACTGGATGTTGGAATGAATGATACTATCTGCGACCAGCTTGAACAGGCTATGGCTGAGGCTGATAATGCTGTGCAAAATGCATATCAAGAAACTGTAAGGCGTAGGAAAGCTGAAAGAGAAGCCTTTGAAGCTATACGCAAGGCTAAAGCTTCTGAAAGCTTATATACAGATGAGTTGAACCTGAGGAAAATGGCAGAGGAAGAacttagaaaagaaaaggaagaacttGAGAATATGAAGAGCCAGAGAGACAAGGTTAAGGAAGAACTCTACCTTGCCCTTGATCAAAAGGCATTGCTAGAGAGTCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAAATTGTATCTGCTGTGGATCTGTTACAAAGCTACAAGAATGAACGAGATGAATTGCAGATGCAGCGCGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCGTGCACCCATGTGCCTCAATTGTTTTCAGAATTCTCTTTTTCAGAGATTAAAGATGCAACAAGTAACTTCAATCCATCCTTGAAGATTGGAGAAGGTGGATATGGCAGTATATTTAAAGGTGTCTTGCGTCACACCGAGGTGGCTATAAAAATGTTGCACTCCAACAGCATGCAAGGACCCTTGGAGTTTCAACAGGAGGTTGATGTGTTGAGCAAGCTAAGGCATCCCAATCTTATCACACTCATAGGAGCCTGCCCAGAATCATGGACTCTTGTATACGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTTGCCTGCAAGGATAACACCCCTCCGTTATCATGGCAAACTCGAATTCGCATTGCTGCTGAACTATGCTCCGCTCTCATCTTTCTCCATTCCAGTAAACCTCACAGCATAGTGCATGGTGATTTAAAACCCTCCAACATTCTCCTTGATGCAAACCTTATCAGCAAGCTTAGTGACTTTGGAATCTGTCGTATATTATCTAACTGCGAGAGTTCTAGTAATACTACAGAGTTTTGGAGAACTGGTCCAAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCCTCAGGGGAACTTACTCCAAAGTCAGATGTTTATTCATTTGGAATCATATTGTTGAGATTGTTGACTGGGAGACCAGCCTTGGGAATAACAAAGGAAGTGAAATATGCATTAGACACTGGAAAGTTGAAATCCCTGTTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAGGCTGAGCAGTTGGCTCGCTTGGCTTTGCGGTGCTGTGATATGAATAGAAAGAGCCGGCCGGATCTTTATTCAGATGTCTGGAGGATACTTGATGCAATGAGGGCTTCTTCTGGAGGCACAAACTCCTTTGGACTTAGTTCTGAAGGGCTTTTACAACCTCCTTCATATTATATTTGTCCAATCTTCCAGGAAGTCATGCAAGATCCACACGTGGCAGCAGATGGTTTTACTTACGAAGCTGAGGCTATACGAGGGTGGCTTGATGGTGGTCACGACAATTCACCAATGACAAATAGTAAGCTTGCACATCACAATCTTGTTCCCAATCGCGCTCTTCGCTCCGCGATCCTGGACTGGCATCAAAACCACTGA 2649 0.4337 MAVVSPEPATTQRMGSVRSTSDAGGEILEEPNPSVVDQPIYVAVTKEVKESKSNLIWAIQHSGGRRICILHVHVPATMIPLLGGKFPASKLKQEQVQTFWEDERQGMHRTLDEYLHICHRMGMRAEKLHIEMDSIEKGILELVSRHGIRKLVMGAASDRYYTRKMMDLRSKKAIYVCREAPASCHILFVCKGHLIHTRDRSLDEGNAEVASPLVQQVPNSERSLRSQSITLGQDHRTNLTNPALDLLRRVRSANDGHRASFLAASSPEDTEGFSTPRDRMGTEVSSDESDRLSRMSPSGLSTCSDSAVELALTPNLITESSENAFELTLSRLIIEDLNHSSPPSTLDVGMNDTICDQLEQAMAEADNAVQNAYQETVRRRKAEREAFEAIRKAKASESLYTDELNLRKMAEEELRKEKEELENMKSQRDKVKEELYLALDQKALLESQIASSELMIKELEQKIVSAVDLLQSYKNERDELQMQRDNALREAEELRKKQGEASCTHVPQLFSEFSFSEIKDATSNFNPSLKIGEGGYGSIFKGVLRHTEVAIKMLHSNSMQGPLEFQQEVDVLSKLRHPNLITLIGACPESWTLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSNCESSSNTTEFWRTGPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYALDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLYSDVWRILDAMRASSGGTNSFGLSSEGLLQPPSYYICPIFQEVMQDPHVAADGFTYEAEAIRGWLDGGHDNSPMTNSKLAHHNLVPNRALRSAILDWHQNH 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0717 882 Coils Coil 400 497 - -
Ssu3g0717 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842|GO:0016567
Ssu3g0717 882 ProSitePatterns Protein kinases ATP-binding region signature. 531 552 IPR017441 GO:0005524
Ssu3g0717 882 ProSiteProfiles Protein kinase domain profile. 525 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0717 882 CDD RING-Ubox_WDSUB1_like 816 857 - -
Ssu3g0717 882 MobiDBLite consensus disorder prediction 1 32 - -
Ssu3g0717 882 Pfam U-box domain 813 882 IPR003613 GO:0004842|GO:0016567
Ssu3g0717 882 Gene3D Transferase(Phosphotransferase) domain 1 598 801 - -
Ssu3g0717 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 882 IPR013083 -
Ssu3g0717 882 Coils Coil 355 375 - -
Ssu3g0717 882 SMART Ubox_2 815 878 IPR003613 GO:0004842|GO:0016567
Ssu3g0717 882 PANTHER OS02G0152300 PROTEIN 30 881 - -
Ssu3g0717 882 MobiDBLite consensus disorder prediction 272 290 - -
Ssu3g0717 882 CDD STK_N 39 192 - -
Ssu3g0717 882 Pfam Protein kinase domain 529 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0717 882 Gene3D Phosphorylase Kinase; domain 1 495 597 - -
Ssu3g0717 882 SUPERFAMILY RING/U-box 806 881 - -
Ssu3g0717 882 MobiDBLite consensus disorder prediction 259 300 - -
Ssu3g0717 882 SMART serkin_6 525 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0717 882 PANTHER U-BOX KINASE FAMILY PROTEIN 30 881 - -
Ssu3g0717 882 SUPERFAMILY Protein kinase-like (PK-like) 504 782 IPR011009 -
Ssu3g0717 882 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 58 158 - -
Ssu3g0717 882 Gene3D HUPs 34 157 IPR014729 -
Ssu3g0717 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0717 Ssu-Chr3 17292360 17298796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0717 1 882 U-box Gene Family AT2G45910 53.700 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu3g0717 Pkinase 2.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0717 - - gmx:100807515 1555.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0717 3 17292360 17298796 Ssu3g0717 3 17292360 17298796 ECH
Ssu4g2796 4 71341790 71347284 Ssu3g0717 3 17292360 17298796 ECH