LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g0713	ATGGATAAAGACAAAGCCCCACAAACCCCCAGAAGAATGACCAGGTCTTCagcttcatcttcatcttctgcATCCACTTCAAATAATGTAACTGCTGCAAAAGTAAATAGCCTTGAACCTCTAACAATCAATGACCTTTTAGTTGGAGGAGATCCCATCAGCCTAGATGATATAATTTCTAGCTTTCCTGGTAGAAGTAGCCAGATTCTTGAGATTGTGCGTCTTTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTTATGTACGGAGGTTCTTCTACTGGAAAAACCAGTATCATTCTTCAATTATTCAGGCACCTCAACAGGCCTCTTGTTTATTCTAGTTGTAGGACATGTTATAACCAGTGTATCTTGTTTGAATCTATTCTAAATCAGTTACTTCTCCATAGAAAAAATGCTGCCAATAGTTATTCGAATGCAAAACGTTGTGAAAGACCATCtgattttgtcaattttcttcGGGAAGCATTGACCAATGTTATAAACAATTTGAAGGAGAAGTCAGAGAAGTTGATCTCAAATAACATCACGCAAGGGAAAATTGGAAATATGATCTACTTGGTATTTGACAATTTTAACCTTGTTAGGGAGTGGGATAAGAGTTCTACTATATTACCCTTACTGTTTAATCTCTATGATCTGCTAAAGATGCCTGAGGTGGGTCTGATTTTTATCAGCAGTACTTCTCCAGATACATTTTACTCTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCTGATTACATAGAAGGTGATATTCGTCAAATATTATTGAGAAACCAAGTGAACCAGAAGCTATATTCTTCATTTTTGGATGTAGCTCTGAATTCTTTCTGTAGAATTACTAGGCAGGTTGGTGATTTGTCTGCTGCCTTAAAGCCactatatgaaaaatattgtgaACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTAATGCAGAGATGAAGCGAAGGCTGTTCAGACATATCAACCCTCATATTACATCCTATTTGAATGAGGTATTTAAGGTTTCGTCTCTTTCTTCAACTGAAGTTGAGACCCGTAAAGAGGAAAAGTGGAAGGGAAATCCCAGGAGGTTGGAGCAATCTGAAGAACTTGGCAGTCTTGCCTTTCATATGTCTACTAGTGCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGCCCTCTGAGAAAGCGCTGGAACGGAAGGAAACTTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGATTGTTAGCCATCTTTCAGTGCCTTGTATCAGTTGCAGAAGAGCCATCCGACGACGAGGAACAAAACAATGATGGATTAGGAGTTGAAGGTGGCAATGGCGGACTGATGTCCGACGTTCTTTTGCAGCTATCCAGTCTCTGCAATGCTAGTTTTATATTCAAAGGAAGAAGCTGTCCGATTGAAGGCTCAACCCGGTACCGATCAACCATATCTGAAGACCTGGCTTTGAAGGTTGCAAGGAGCCTAAAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAG	1635	0.3872	MDKDKAPQTPRRMTRSSASSSSSASTSNNVTAAKVNSLEPLTINDLLVGGDPISLDDIISSFPGRSSQILEIVRLLGPLNSPMLPLFMYGGSSTGKTSIILQLFRHLNRPLVYSSCRTCYNQCILFESILNQLLLHRKNAANSYSNAKRCERPSDFVNFLREALTNVINNLKEKSEKLISNNITQGKIGNMIYLVFDNFNLVREWDKSSTILPLLFNLYDLLKMPEVGLIFISSTSPDTFYSNMGYVEPIPIYFPDYIEGDIRQILLRNQVNQKLYSSFLDVALNSFCRITRQVGDLSAALKPLYEKYCEPLSDKGKGVAPNAEMKRRLFRHINPHITSYLNEVFKVSSLSSTEVETRKEEKWKGNPRRLEQSEELGSLAFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKALERKETLEEELLMKGPGTFPLERLLAIFQCLVSVAEEPSDDEEQNNDGLGVEGGNGGLMSDVLLQLSSLCNASFIFKGRSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRS	544

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g0713	544	Pfam	AAA ATPase domain	62	224	IPR041664	-
	Ssu3g0713	544	MobiDBLite	consensus disorder prediction	11	29	-	-
	Ssu3g0713	544	MobiDBLite	consensus disorder prediction	407	431	-	-
	Ssu3g0713	544	Gene3D	-	62	243	IPR027417	-
	Ssu3g0713	544	PANTHER	ORIGIN RECOGNITION COMPLEX SUBUNIT 5	54	543	IPR020796	GO:0000808\|GO:0005634\|GO:0006260
	Ssu3g0713	544	Coils	Coil	157	181	-	-
	Ssu3g0713	544	Pfam	Origin recognition complex (ORC) subunit 5 C-terminus	252	541	IPR020796	GO:0000808\|GO:0005634\|GO:0006260
	Ssu3g0713	544	MobiDBLite	consensus disorder prediction	412	431	-	-
	Ssu3g0713	544	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	58	270	IPR027417	-
	Ssu3g0713	544	MobiDBLite	consensus disorder prediction	1	29	-	-

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g0713	3	543	Core DNA Replication Machinery Family	AT4G29910	57.749	0.0	624

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g0713	K02607		-	gmx:100782175	934.095

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