Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0713 ATGGATAAAGACAAAGCCCCACAAACCCCCAGAAGAATGACCAGGTCTTCagcttcatcttcatcttctgcATCCACTTCAAATAATGTAACTGCTGCAAAAGTAAATAGCCTTGAACCTCTAACAATCAATGACCTTTTAGTTGGAGGAGATCCCATCAGCCTAGATGATATAATTTCTAGCTTTCCTGGTAGAAGTAGCCAGATTCTTGAGATTGTGCGTCTTTTGGGACCTTTGAATTCACCAATGCTTCCTTTGTTTATGTACGGAGGTTCTTCTACTGGAAAAACCAGTATCATTCTTCAATTATTCAGGCACCTCAACAGGCCTCTTGTTTATTCTAGTTGTAGGACATGTTATAACCAGTGTATCTTGTTTGAATCTATTCTAAATCAGTTACTTCTCCATAGAAAAAATGCTGCCAATAGTTATTCGAATGCAAAACGTTGTGAAAGACCATCtgattttgtcaattttcttcGGGAAGCATTGACCAATGTTATAAACAATTTGAAGGAGAAGTCAGAGAAGTTGATCTCAAATAACATCACGCAAGGGAAAATTGGAAATATGATCTACTTGGTATTTGACAATTTTAACCTTGTTAGGGAGTGGGATAAGAGTTCTACTATATTACCCTTACTGTTTAATCTCTATGATCTGCTAAAGATGCCTGAGGTGGGTCTGATTTTTATCAGCAGTACTTCTCCAGATACATTTTACTCTAACATGGGTTATGTGGAGCCTATCCCCATTTACTTTCCTGATTACATAGAAGGTGATATTCGTCAAATATTATTGAGAAACCAAGTGAACCAGAAGCTATATTCTTCATTTTTGGATGTAGCTCTGAATTCTTTCTGTAGAATTACTAGGCAGGTTGGTGATTTGTCTGCTGCCTTAAAGCCactatatgaaaaatattgtgaACCTTTAAGTGATAAGGGAAAGGGAGTTGCTCCTAATGCAGAGATGAAGCGAAGGCTGTTCAGACATATCAACCCTCATATTACATCCTATTTGAATGAGGTATTTAAGGTTTCGTCTCTTTCTTCAACTGAAGTTGAGACCCGTAAAGAGGAAAAGTGGAAGGGAAATCCCAGGAGGTTGGAGCAATCTGAAGAACTTGGCAGTCTTGCCTTTCATATGTCTACTAGTGCAAAGTATCTTCTGATTTCAGCATTCCTTGCCTCCAGAAACCCAGCTACTCTTGATGCTTCACTTTTTGATTCCAAAGGTGGTTCTGATAATCGAAAGCGAAAGAGGAAGCCCTCTGAGAAAGCGCTGGAACGGAAGGAAACTTTAGAAGAGGAACTACTAATGAAAGGACCTGGAACTTTCCCATTGGAGAGATTGTTAGCCATCTTTCAGTGCCTTGTATCAGTTGCAGAAGAGCCATCCGACGACGAGGAACAAAACAATGATGGATTAGGAGTTGAAGGTGGCAATGGCGGACTGATGTCCGACGTTCTTTTGCAGCTATCCAGTCTCTGCAATGCTAGTTTTATATTCAAAGGAAGAAGCTGTCCGATTGAAGGCTCAACCCGGTACCGATCAACCATATCTGAAGACCTGGCTTTGAAGGTTGCAAGGAGCCTAAAGTTCCCATTATCAAAGTATTTGTATAGAAGTTAG 1635 0.3872 MDKDKAPQTPRRMTRSSASSSSSASTSNNVTAAKVNSLEPLTINDLLVGGDPISLDDIISSFPGRSSQILEIVRLLGPLNSPMLPLFMYGGSSTGKTSIILQLFRHLNRPLVYSSCRTCYNQCILFESILNQLLLHRKNAANSYSNAKRCERPSDFVNFLREALTNVINNLKEKSEKLISNNITQGKIGNMIYLVFDNFNLVREWDKSSTILPLLFNLYDLLKMPEVGLIFISSTSPDTFYSNMGYVEPIPIYFPDYIEGDIRQILLRNQVNQKLYSSFLDVALNSFCRITRQVGDLSAALKPLYEKYCEPLSDKGKGVAPNAEMKRRLFRHINPHITSYLNEVFKVSSLSSTEVETRKEEKWKGNPRRLEQSEELGSLAFHMSTSAKYLLISAFLASRNPATLDASLFDSKGGSDNRKRKRKPSEKALERKETLEEELLMKGPGTFPLERLLAIFQCLVSVAEEPSDDEEQNNDGLGVEGGNGGLMSDVLLQLSSLCNASFIFKGRSCPIEGSTRYRSTISEDLALKVARSLKFPLSKYLYRS 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0713 544 Pfam AAA ATPase domain 62 224 IPR041664 -
Ssu3g0713 544 MobiDBLite consensus disorder prediction 11 29 - -
Ssu3g0713 544 MobiDBLite consensus disorder prediction 407 431 - -
Ssu3g0713 544 Gene3D - 62 243 IPR027417 -
Ssu3g0713 544 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 5 54 543 IPR020796 GO:0000808|GO:0005634|GO:0006260
Ssu3g0713 544 Coils Coil 157 181 - -
Ssu3g0713 544 Pfam Origin recognition complex (ORC) subunit 5 C-terminus 252 541 IPR020796 GO:0000808|GO:0005634|GO:0006260
Ssu3g0713 544 MobiDBLite consensus disorder prediction 412 431 - -
Ssu3g0713 544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 270 IPR027417 -
Ssu3g0713 544 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0713 3 543 Core DNA Replication Machinery Family AT4G29910 57.749 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0713 K02607 - gmx:100782175 934.095