Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0708 ATGGAAGGGTCGAACTCTTGCTTGAGTGAGAGTATATATGAGATAGAGGGTCTCACACTTGAGGGAGAAATTATTGGAAATGACAACCCATGTTGTCGTGGAAGCCCAGCCCAATGTCCCTATCTTCGGATCCGAAACGACGTCGTTGTCAAGCAAATCGAGGACATTTCATGGTTTCCTCCTACGTTCTTCTGCATAGCGCAGTTTTCGCAAGACCCTGAAATGGGTTATCTAGGCAAAGCTTCCAAAACCCTAAGGCAATCGAATTTCCTATCGTTGTTGtgcaatttcaatttcaacccATTAACCAACAGAATAACCCACGAACGCTTTTCTGTGACGCGTGCACTGTTCTGTTCCCAGTCACGCCAACACAGCACCGCGAGAGAGAGAAGCGCCGTAGATTTGAGCCAATACCCTCCGGAGCTCGTTAGAAACTTCTCGATCATTGCGCACGTGGATCATGGCAAGTCCACCCTTGCTGATCGGCTTCTAGAACTCACTGGAACCATCAAGAAGGGCCACGGCCAACCCCAGTATCTTGATAAATTGCAGgtggagagagaaagaggaatcACGGTTAAAGCCCAGACAGCAACGATGTTCTATAAGCACAGAATAAATGGTGATGGTTGCAGTGATGGAAAGGAGTCACCTAATTTTTTGCTGAATCTTATTGACACTCCTGGACATGTTGATTTTAGTTATGAAGTGTCAAGGTCACTGGCAGCTTGTCAAGGTGTGCTTTTGGTTGTTGATGCTGCTCAGGGAGTCCAAGCACAAACTGTTGCTAACTTTTACCTTGCCTTTGAGTCTAACCTGACAATTGTGCCTGTTATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGTGTTAAAGCCCAATTGAAATCAATGTTTGATCTTGACCCAAGTGATGCACTGCTAACATCTGCTAAAACTGGAGAGGGTCTCGAGCACATCCTTCCGGCGGTCATAGAGCGCATACCTGCCCCACCTGGGAGGAGTGTTTCTCCTCTACGCATGCTTTTACTTGATTCATATTATGATGAATACAAAGGGGTAATATGCCATGTTGCTGTTGTTGATGGTGTCTTGCGCAAGGGGGATAAGATTTCTTATGCAGCTACTGGTCAATCATATGAAGCTTTAGATATAGGCATCATGCATCCTGAACTTACACCTACTGGAATCTTGCTTACTGGACAAGTTGGTTATATTGTAAGTGGCATGCGGTCAACCAAAGATGCCCGTGTTGGTGATACAATTTACCATACTCGGAGTGCCATAGAGCCTCTTCCAGgCTTTAAGCCCGCAAAACATATGGTATTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCTCTAAATCACGCAATAGAGAAGTTGACATGCAATGATGCCAGTGTCTCTATAACTAAAGAAACTAGCACTGCTCTAGGACTTGGGTTCAGGTGTGGGTTTTTGGGCCTTCTGCACATGGATGTTTTTCATCAACGGCTTGAACAGGAATATGGAGCTCATGTTATCTCAACTCTCCCTACTGTGCCTTATATATTTGAGTTTTCTGATGGAAGCAAGTTAGAAGTTCAGAATCCTGCTTCATTACCCTCCCATCCCAAGCACCGAGTGGCAGCCTGTTGGGAACCTACAGTAATAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCTGTTATTACCCTTGTCTCTGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGTATTCATGAAGTATCGCCTGCCTTTGAGAGAAAttgttattgacttttataatgaaTTGAAGAGTATAACATCAGGCTATGCATCATTTGATTATGAGGACTCAGATTATCAGCAAGCTGATCTGGTGAAACTTGATATTCTCTTGAATGGACAACCAGTTGATGCAATGGCAACCATTGTTCATAACTCGAAAGCATATCGTGTTGGGCGTGAACTGACGGAGAAATTGAAGAACGTCATAGACAGGCAAATGTTCGAGGTAGCCATACAAGCTGCCATTGGGTCAAAAGTCATATCAAGGGAGACGATTTCTGCTATGAGGAAAAATGTTCTTGCCAAGTGTTATGGTGGTGATGTTACTCGAAAAAGGAAGCTATTGGAGAAgcaaaaggaaggaaaaaagcGAATGAAGCGTGTTGGTTCTGTTGATATACCACAAGAAGCATTTCACGAACTATTGAAGGTTTCTTAG 2244 0.4269 MEGSNSCLSESIYEIEGLTLEGEIIGNDNPCCRGSPAQCPYLRIRNDVVVKQIEDISWFPPTFFCIAQFSQDPEMGYLGKASKTLRQSNFLSLLCNFNFNPLTNRITHERFSVTRALFCSQSRQHSTARERSAVDLSQYPPELVRNFSIIAHVDHGKSTLADRLLELTGTIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHRINGDGCSDGKESPNFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFESNLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPSDALLTSAKTGEGLEHILPAVIERIPAPPGRSVSPLRMLLLDSYYDEYKGVICHVAVVDGVLRKGDKISYAATGQSYEALDIGIMHPELTPTGILLTGQVGYIVSGMRSTKDARVGDTIYHTRSAIEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIEKLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTLPTVPYIFEFSDGSKLEVQNPASLPSHPKHRVAACWEPTVIATIIIPSEYVGPVITLVSERRGQQLEYSFIDSQRVFMKYRLPLREIVIDFYNELKSITSGYASFDYEDSDYQQADLVKLDILLNGQPVDAMATIVHNSKAYRVGRELTEKLKNVIDRQMFEVAIQAAIGSKVISRETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRVGSVDIPQEAFHELLKVS 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0708 747 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 142 334 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 Hamap Elongation factor 4 [lepA]. 140 747 IPR006297 GO:0005525
Ssu3g0708 747 Gene3D Translation factors 337 434 - -
Ssu3g0708 747 Pfam Elongation factor Tu GTP binding domain 144 331 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 PRINTS GTP-binding elongation factor signature 146 159 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 PRINTS GTP-binding elongation factor signature 276 285 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 PRINTS GTP-binding elongation factor signature 189 197 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 PRINTS GTP-binding elongation factor signature 224 234 IPR000795 GO:0003924|GO:0005525
Ssu3g0708 747 Pfam GTP-binding protein LepA C-terminus 639 745 IPR013842 -
Ssu3g0708 747 Gene3D - 142 335 IPR027417 -
Ssu3g0708 747 SUPERFAMILY EF-G C-terminal domain-like 551 645 IPR035647 -
Ssu3g0708 747 TIGRFAM small_GTP: small GTP-binding protein domain 148 322 IPR005225 GO:0005525
Ssu3g0708 747 CDD EF4_II 341 426 - -
Ssu3g0708 747 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 182 197 IPR031157 -
Ssu3g0708 747 Gene3D - 517 630 - -
Ssu3g0708 747 CDD LepA 145 333 - -
Ssu3g0708 747 Gene3D Elongation Factor G (Translational Gtpase), domain 3 435 516 - -
Ssu3g0708 747 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 132 745 - -
Ssu3g0708 747 SUPERFAMILY EF-G C-terminal domain-like 443 520 IPR035647 -
Ssu3g0708 747 TIGRFAM lepA: elongation factor 4 144 746 IPR006297 GO:0005525
Ssu3g0708 747 Gene3D - 631 705 IPR038363 -
Ssu3g0708 747 CDD EF4_III 442 517 - -
Ssu3g0708 747 Pfam Elongation factor G C-terminus 552 637 IPR000640 -
Ssu3g0708 747 PANTHER TRANSLATION FACTOR GUF1-RELATED 132 745 IPR006297 GO:0005525
Ssu3g0708 747 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 373 IPR027417 -
Ssu3g0708 747 CDD lepA_C 552 631 IPR035654 -
Ssu3g0708 747 SMART EFG_C_a 552 637 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0708 Ssu-Chr3 17155381 17160383 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0708 144 285 Eukaryotic Initiation Factors Gene Family AT1G56070 41.497 2.35e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0708 K21594 - gmx:100781092 1244.18