Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0702 ATGATGAGTAACGGGGAGCCCTTGGATTTGTATAAGCTTTTCGTGGTGGTGAAGGAGAAGGGGGGTTATGATGCTGTTTGTAAGAACAGATTGTGGGATTTGGTGGGGGAAGAATATGGGCTGGGTGTGAAGGTTGGTTCATCTGTGGAACTTGTTTACAGTAAGCACTTAAGTGCTCTAGAGACATGTTTGAAGAATGTTGCTGATGGTGAGTTCCCTGAGTGTGGTTTAGTGGATGATAGAGTTAAGTTTCGCAAGCGTTTGATAGAGGCGCAAGCTGAATCCTTGTCGGATGATTATGGTGAGGAAGAGGCGGGGGATGAACTTGAGAGGAGAGTGTGTGAATGTCCTGATGGGAGGAAGATGTGTGGAAGTAATAGAGTGAAGGGCATGAAACCGGAGTCAAATGTGGCTGAACTCGAGAGGGTATATGAGTATCTAGATGGGAGGAAGTTGTGTGGTGCTGATAGAATTAAGGGCAAGAATAAGGATTCTAGTGGGGATGAATTTGATAAGGTATGTGACAATCTAGATAGAAGGAAGTTGTGTGGTACTAATAGGGTAAAGGGCTTGAATCCAGAGTCCAATGTGGCCAAGAAAGTTCAGAGTGAAGGAGTTGTTGATTTGGATATGCTGGACCGTGGGATGGATGAGCCTTTTCATGCAAACTTGTGCAGCCTTAATACTGCAGTGGATATACTGGAAGAGTTTGATGAGGGCAAAACATTAACTGTAGATGCATCCGATGCAGAAAGCAACATGCCTAGATTATCAGATGGAAGCAAGAGCtgtgataatgatgatgatgacgataGTGATGAAGTCTTGATATTGGATCCATCCGGTGTTGACAAAGAGAGCTTTGGTCGTAAGAGGAAGAGAGAGTCTAAGTCAGAAATGCTAAGTTGGGTTACTAGCATTGCTAAAAATCCTTGTGATCCTGCAGTTGGTTCAATACCTGAAAAGTCTAAGTGGAAGTCTTACAGTAGTCAGGAGATTTGGAAGCAGGCTTTGTTGTTTCGAGAAGCTGTCTATCTGAAGAAAGATTTTGAGACAATCAGTGAACGACTTAGTTGGCAGGGTCAGAGAATGCATCCTTCCATGTATGATGATCGCAATGGGGCAATGTACAATCTTAGACAGAGGTTGAAATGTGACAAGGGGCTTGTATTGGGAAAATCTAAATCTGATGAAGTTTCTTCAGCTTCATCTGGAGGAACACATGGAGGTTTGGAGAGAACCCCGAGTCCTCATGCTGACAATCGTTCTGAGAAACGGTTACTTGACTCCTGTACTGCACGCTCAAGTCTTGATAAATGTGCCAGAGTGCACATCCCTGTGGGGCCAAATCATCAAGCTGAAGTGCCAGAATGGACTGGCATGACTTATGAGAGTGATTCTAAGTGGTTGGGGACCCGAATATGGCCTCCAAAAACTGTAAATTCCAAGAAGCTTTTCTTTGAAAGGGACCCTATTGGAAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACTAGGTTCTGTTGAGTGCGTCCGATTCCACATTGCTAAGAAAAGGTCTAAAGTTAAGTTGGAATTGGGCGAGGCTTTTTACCAATGGAATTTACACAAGGTAGGTGAAGAAGTTAGGGGTTCATGGAAAGAGCAAGAAGAGAAGAAGTTCCAAGATGTGGTGAAATCAAACCCTGCTTCACTTGATAAATGTTATTGGGAtcatctttttaaaacatttccTATGAAGAGCAGAGAAGATTTAGTCAGCTATTACTTCAATGTCTTTCTTTTGCAGCGCAGAGCATATCAGAATAGGCATACTCCAGATAACATTGACAGTGATGATGATGAATCAGAATTTACACCACTGAGGAAAGTTTTTGGACATCAAACACAGACGTCTCGCGGCTTCACCTTGTTATCCCCGAAAAAAGCCACAGACAGAAGGGAAAAAAGCAAGTGA 1956 0.4248 MMSNGEPLDLYKLFVVVKEKGGYDAVCKNRLWDLVGEEYGLGVKVGSSVELVYSKHLSALETCLKNVADGEFPECGLVDDRVKFRKRLIEAQAESLSDDYGEEEAGDELERRVCECPDGRKMCGSNRVKGMKPESNVAELERVYEYLDGRKLCGADRIKGKNKDSSGDEFDKVCDNLDRRKLCGTNRVKGLNPESNVAKKVQSEGVVDLDMLDRGMDEPFHANLCSLNTAVDILEEFDEGKTLTVDASDAESNMPRLSDGSKSCDNDDDDDSDEVLILDPSGVDKESFGRKRKRESKSEMLSWVTSIAKNPCDPAVGSIPEKSKWKSYSSQEIWKQALLFREAVYLKKDFETISERLSWQGQRMHPSMYDDRNGAMYNLRQRLKCDKGLVLGKSKSDEVSSASSGGTHGGLERTPSPHADNRSEKRLLDSCTARSSLDKCARVHIPVGPNHQAEVPEWTGMTYESDSKWLGTRIWPPKTVNSKKLFFERDPIGKGRQDSCGCQVLGSVECVRFHIAKKRSKVKLELGEAFYQWNLHKVGEEVRGSWKEQEEKKFQDVVKSNPASLDKCYWDHLFKTFPMKSREDLVSYYFNVFLLQRRAYQNRHTPDNIDSDDDESEFTPLRKVFGHQTQTSRGFTLLSPKKATDRREKSK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0702 651 MobiDBLite consensus disorder prediction 394 425 - -
Ssu3g0702 651 Gene3D - 1 71 IPR036431 GO:0003677
Ssu3g0702 651 MobiDBLite consensus disorder prediction 623 651 - -
Ssu3g0702 651 SMART bright_3 1 66 IPR001606 GO:0003677
Ssu3g0702 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1 1 646 - -
Ssu3g0702 651 MobiDBLite consensus disorder prediction 246 260 - -
Ssu3g0702 651 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Ssu3g0702 651 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 646 - -
Ssu3g0702 651 MobiDBLite consensus disorder prediction 623 638 - -
Ssu3g0702 651 ProSiteProfiles ELM2 domain profile. 443 567 IPR000949 -
Ssu3g0702 651 CDD ARID 4 61 - -
Ssu3g0702 651 SUPERFAMILY ARID-like 4 72 IPR036431 GO:0003677
Ssu3g0702 651 Pfam ARID/BRIGHT DNA binding domain 4 61 IPR001606 GO:0003677
Ssu3g0702 651 SMART ELM2_2 445 497 IPR000949 -
Ssu3g0702 651 MobiDBLite consensus disorder prediction 244 277 - -
Ssu3g0702 651 MobiDBLite consensus disorder prediction 396 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0702 Ssu-Chr3 16986271 16991935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0702 5 78 ARID Transcription Factor Family AT1G20910 33.766 5.48e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu3g0702 ARID 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0702 - - gmx:102667655 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0702 3 16986271 16991935 Ssu4g2806 4 71549434 71553041 PCT