Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0701 ATGGAGCAGCCAAGTCCAAAGAAGGAGCACAACTTCAGAATTTTTACTTTGCAAGAGCTCGTAGACGCTATAAATGGTTTCAATAGGAAGCTAAAGATTGGAGAAGGGAATCCCGGGGAAGTATATAGGGGGCATAAAGAATCGCTTGAAGAAGTTCAATTTCGTAGAGTTGTTAACCACCCAAATTTGGTTAAGCTTCTGGGATACTGCTCTGTAGAGAGTCAAAGAGGAGGAATCCAAATCCAACAGTTGTTGGTGTATGAGTTCATGCCGAACAGGACCCTGGAAGATCATCTTTTCACTCTTTCTTTACCTCATTTGTCTTGGAAAACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACATTATCTACATAACGAATTGGATGTTCAGGTGATCTACCGACATTTCAGATCTTCAAATGTGCTATTGGACAGGAAATTCCATCCCAAGCTCTCCGATTTCAGTCCTTCTAAGGAGGGGCTAACAGGTAAGCAAAAGAGGGAGCACAATGGAGGAGAGAGCAGTGGCTCATCCTCTGATGAAAATTCTCCTAGGAAAGGCACAAAAAATGGGGAGACACCATTGTTCAATGGTCCCAATTCTTCCATGGAGACAACAGAACTCCACCATGCTCCTGCGGGTCTAATTGACACAAATGTAGCAGACTACACTGGAATAAATGGCCTTGgagatattaaaaatgtgttcaCTGTGGAATCCATAAAGCTTTGGCAAATTGGTGGCCCCATTGCTTTTAGCGTACTGTGCAATTATGGGGTCAATTCCTTCACAAATATCTTTGTTGGCCATCTTGGAGATTTAGAACTCTCTGCAGTTTCAATCTCCCTCTCTGTCATTTCAAATTTCTCTTTTGGCTTCTTGCTTGGCATGGCAAGTGCACTAGAGACTTTATGTGGGCAAGCATTTGGTGCTGGACAAGTAGATATGCTAGGGGTTTACATGCAACGTTCTTGGATAATCTTATTTGGTGCATGCATCTGCATCTTGCCAATTTACATTTATGCTGAGCCAATCTTAATACTCCTTGGACAAGAACGTCAAATTGCAGAGTTAGCTGGAGTATTTACTCTTCAATCTATCCCTCAGATGTTTTCTCTAGCCATCAATTTTCCTACCCAAAAATTCTTGCAGGCACAAAGCAAAGTAGGATTCCTGGCATGGCTGGGTTTTGGAGTCCTTCTTTTACATATTCtgattctatatattttaattaaagtgtgTGCTTTGGGTACAACCGGTGCTGCTGCAGCCTATTGCTTAACAGCTTGGATTATTGCTTTGGCTCAAACGGCCTATGTTATGGGTTGGTGCAAGGATGGGTGGAGAGGCTTCTCATGGTTAGCCTTCAAGGATCTTTGGGCCTTTTTGAAATTGTCTGTTGCTTCAGCAGTCATGCTTTGCCTAGAGGTTTGGTATTTTATGATCTTGATTGTTCTCACTGGGCACCTTGACAATCCAGTTATTGCTGTTGGTTCTCTTTCAATATGCATGAATATCAATGGATGGGAAGGCATGTTATTTATAGGGATCAATGCAGCAATTAGtgtgagGGTTTCCAATGAGCTTGGATCAGGACGCCCAAGAGCAGCAAAATATTCTGTCATTGTCACAATTGTTGAGTCCCTCATCATTGGGTTACTTTCTGCAGCCattattttaatcacaaaaGATCATTTTGCTATCATTTTCACTAACAgtaaagaaatgataaaagcAGTTTCTAAATTAGCAGGCCTTCTTGGTATAACCATGATTCTGAATAGTATTCAGCCAGTTATATCAGGTGTTGCTGTTGGAGGAGGTTGGCAGGCTTTGGTAGCTTACATCaatctattttgttattatatcatAGGACTCCCTCTTGGCATTGTTTTTGGTTACAAGTTGGGTTATAGAGTGGAGGGCATTTGGGTTGGAATGATCTGTGGGACAGCGTTGCAAACGGGCATCTTGCTGCACATTGTCTATAAAACAAACTGGAACAAGGAGGTTGAGCAAGCATCAGAACGAATGCGGAAATGGACCGGACAAGAATTGGAAATTAATACCatgtaa 2085 0.4043 MEQPSPKKEHNFRIFTLQELVDAINGFNRKLKIGEGNPGEVYRGHKESLEEVQFRRVVNHPNLVKLLGYCSVESQRGGIQIQQLLVYEFMPNRTLEDHLFTLSLPHLSWKTRLQIMLGAAQGLHYLHNELDVQVIYRHFRSSNVLLDRKFHPKLSDFSPSKEGLTGKQKREHNGGESSGSSSDENSPRKGTKNGETPLFNGPNSSMETTELHHAPAGLIDTNVADYTGINGLGDIKNVFTVESIKLWQIGGPIAFSVLCNYGVNSFTNIFVGHLGDLELSAVSISLSVISNFSFGFLLGMASALETLCGQAFGAGQVDMLGVYMQRSWIILFGACICILPIYIYAEPILILLGQERQIAELAGVFTLQSIPQMFSLAINFPTQKFLQAQSKVGFLAWLGFGVLLLHILILYILIKVCALGTTGAAAAYCLTAWIIALAQTAYVMGWCKDGWRGFSWLAFKDLWAFLKLSVASAVMLCLEVWYFMILIVLTGHLDNPVIAVGSLSICMNINGWEGMLFIGINAAISVRVSNELGSGRPRAAKYSVIVTIVESLIIGLLSAAIILITKDHFAIIFTNSKEMIKAVSKLAGLLGITMILNSIQPVISGVAVGGGWQALVAYINLFCYYIIGLPLGIVFGYKLGYRVEGIWVGMICGTALQTGILLHIVYKTNWNKEVEQASERMRKWTGQELEINTM 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0701 694 PANTHER PROTEIN DETOXIFICATION 222 680 - -
Ssu3g0701 694 ProSiteProfiles Protein kinase domain profile. 1 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0701 694 SUPERFAMILY Protein kinase-like (PK-like) 8 166 IPR011009 -
Ssu3g0701 694 MobiDBLite consensus disorder prediction 157 206 - -
Ssu3g0701 694 TIGRFAM matE: MATE efflux family protein 252 647 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0701 694 MobiDBLite consensus disorder prediction 178 206 - -
Ssu3g0701 694 PANTHER MULTIDRUG RESISTANCE PROTEIN 222 680 - -
Ssu3g0701 694 MobiDBLite consensus disorder prediction 163 177 - -
Ssu3g0701 694 Gene3D Transferase(Phosphotransferase) domain 1 18 192 - -
Ssu3g0701 694 Pfam Protein tyrosine and serine/threonine kinase 45 169 IPR001245 GO:0004672|GO:0006468
Ssu3g0701 694 Coils Coil 667 687 - -
Ssu3g0701 694 Pfam MatE 472 633 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0701 694 Pfam MatE 252 412 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu3g0701 694 CDD MATE_eukaryotic 242 676 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0701 Ssu-Chr3 16929917 16943172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0701 9 163 Receptor kinase-like Gene Family AT3G58690 38.333 9.48e-28 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g0701 MatE 7.4e-29 CL0222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0701 K03327 - gmx:100786991 851.662