Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0700 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCAAGGAGCACCAGTGTATTACTATTGCCCACCAACTTTTGAAGAGCACGGGTCTGTGACATCTAATGATGGCACAAATGCTTCACTCAATGCTGGATTTCTGGTTGGTTTGAACCTGGAAGCATCCATGCCTGATACTTTCCAGCCCCCTCCTGTGCCTCTACCTTATGATACGGTCTTGGGAGGTTCTGCATCAACAGATTCTGAATCTGGCAGAGAAACAGTTAGTAGTTATGAAACTTTAATCACACGTGAAGATGTTGAAGAATCAGATTTTAAAGCTCAAGCCAATTCTGCTCCTAGATCTCCAAGGAAGGCAGAACTATCAAAATCAAATGTAACTCAAGTATTCATGACAGAAGAGGAGGATGTCTGTCCAATTTGTCTTGAAGAATATGATGTTGAGAATCctagaaatttgacaaaatgtGAACACCATTTTCACCTATGTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGATCAGGAGATGATATTTTGA 555 0.4054 MGGCCCSARKPHLQGAPVYYYCPPTFEEHGSVTSNDGTNASLNAGFLVGLNLEASMPDTFQPPPVPLPYDTVLGGSASTDSESGRETVSSYETLITREDVEESDFKAQANSAPRSPRKAELSKSNVTQVFMTEEEDVCPICLEEYDVENPRNLTKCEHHFHLCCILEWMERSDSCPICDQEMIF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0700 184 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 184 - -
Ssu3g0700 184 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Ssu3g0700 184 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 184 - -
Ssu3g0700 184 Pfam Ring finger domain 137 178 IPR001841 -
Ssu3g0700 184 MobiDBLite consensus disorder prediction 102 122 - -
Ssu3g0700 184 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 183 IPR013083 -
Ssu3g0700 184 SMART ring_2 138 178 IPR001841 -
Ssu3g0700 184 SUPERFAMILY RING/U-box 131 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0700 Ssu-Chr3 16911949 16913652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0700 1 184 C3H Transcription Factor Family AT4G00335 56.989 5.20e-71 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0700 - - gmx:100812687 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0700 3 16911949 16913652 Ssu4g2810 4 71596448 71599412 PCT