Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0690 ATGGCGATGGAGGGAGAGAGAGACGAGTCGGACGAGTCAACTCGGTCGGAGGAGGAAGTGGACCCGGTGAAGGATATCCAGCGAATCATCGAATCGGTGGTTCAATTCGGCGAGTACCGAAAGACGCAGAGGAAGGAGAGCCACAACCTCGTGCGTCGTTTCAAGCTCATGTTGCCGCTCTTGGAAGAGCTTCGCGACCTGCCTCAACCCTTTCTAGAAAACGGTGTTGCTTGGTTGACCAAACTCAGGGACGCGCTTTTGTTCGCCAAGGACTTGTTGAGATTGTGCAGCCAAGGAAGCAAGATTCACCTCGCTTTGGATATCGAGGCAGTTATGATCACGTTTCAGAAGGTGTATGACAAATTAAGCCTAGCGTTTGAAggtgtgccttgtgatgaattGGGTATCTCGGATGAAGTCAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAAGCGAGCCAGGAGAAGAACTGATACACAGGATATAGAACTTGCAATGGATATGATGGTGGTGTTCTCTGATGAAGATGATAGAAATGCTGATAGTGCTATCATTGAGAGGCTGGCAAAAAAGCTGGAGCTCCATAGTGTTGAGGATCTTAATACAGAAACAGTGGCTATTAGGAACCTTGCTGCAGAAAGAAAGGGGCAACAGGTTGAGAGTACTCAGCGAATAATTAACCTTCTTAACAAATTCAAACGAATTGCAGGCATGGAAGAAACTAACGTCCTTGAAGATCCTGCTATGCCCAAGATGCTTGAGAGGTGCACCTCTTTGCTCATCCCTCATGAGTTTCTCTGCCCAATAACACTAGAAATCATGACAGATCCTGTTATTATAACAAGTGGACAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCCAATCCAACCATAACACATGCCCAAAGACTAGGCAACCTTTGGAACACCTGTCATTGGCACCAAACTGTGCCTTAAAAAGCTTGATTGAAGAATGGTGTGAGAACAACAACTTCAAACTTCCCAAAAAGTATAATTCTTCAGGTCAAGAAAATTGTTCCATAGACAGCAAAGAGGAAATTCCAACTTTGGTTGAGAGCCTATGGTCTATTCATTTAGAAGAGCAGAGAAAGGCAGTGGAGAAGATACGTCTGATATCAAAGGAAAGTCATGAGAACAGGGGTTTGGTTGCTGAACATGGAGGAATACCACCACTAGTGCAACTCCTATCCTATCCAGACTCAAAAATACAGGAACATGCTGTGACAGCgcttttaaatttatcaattgatGAGGGTAACAAGAGACTTATATCCGCAGAAGGTGCCATTCCAGCTATTATAGAAGTTTTGGAGAATGGGAGTTGTGTGGCTAAGGAAAACTCAGCAGCAGCTTTATTCAGCTTGTCAATGCTTGATGAGATTAAAGAGATTGTGGGGCAATCAAATGGGATCCCCCCTTTGGTGGATTTGTTGAGGAATGGAACAGTTAGAGGGAAGAAAGATGCTGCTACAGCACTTTTTAACTTATCTCTCAACCATGCAAATAAAGGTAAGGCCATTAGTGCTGGCATTGTGGCACCTTTATTTCAAGTGCTCAAGGACACAAACTTGGGCATGATTGATGAGGCACTCTCCATTCTGCTACTCCTTGTATCAAACTCAGAAGGGAGACAAGAGATTGGACAACTCACGTTCATTGAAACCCTTATTGGGTTCATGCGAGAAGGGAGTCCCAAGAACAAGGAATGTGCAGCATCTGTTCTTCTAGAGTTGTGCTCAAATAACTCATCCTTCATATTGGCAGCACTTCAGTTTGGAGTGTATGAGCATTTGATGGAGATCAAACAAAATGGAACAAATAGAGCACAGAGGAAAGCAATTGCAATCTTAGAGCTTATAAGCAGGAGCGAGCAAATTTAA 1908 0.4324 MAMEGERDESDESTRSEEEVDPVKDIQRIIESVVQFGEYRKTQRKESHNLVRRFKLMLPLLEELRDLPQPFLENGVAWLTKLRDALLFAKDLLRLCSQGSKIHLALDIEAVMITFQKVYDKLSLAFEGVPCDELGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDEDDRNADSAIIERLAKKLELHSVEDLNTETVAIRNLAAERKGQQVESTQRIINLLNKFKRIAGMEETNVLEDPAMPKMLERCTSLLIPHEFLCPITLEIMTDPVIITSGQTYERESIEKWFQSNHNTCPKTRQPLEHLSLAPNCALKSLIEEWCENNNFKLPKKYNSSGQENCSIDSKEEIPTLVESLWSIHLEEQRKAVEKIRLISKESHENRGLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNLSIDEGNKRLISAEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGIPPLVDLLRNGTVRGKKDAATALFNLSLNHANKGKAISAGIVAPLFQVLKDTNLGMIDEALSILLLLVSNSEGRQEIGQLTFIETLIGFMREGSPKNKECAASVLLELCSNNSSFILAALQFGVYEHLMEIKQNGTNRAQRKAIAILELISRSEQI 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0690 635 CDD RING-Ubox_PUB 266 308 IPR045210 -
Ssu3g0690 635 Pfam U-box domain 262 332 IPR003613 GO:0004842|GO:0016567
Ssu3g0690 635 Gene3D - 336 635 IPR011989 -
Ssu3g0690 635 ProSiteProfiles U-box domain profile. 261 335 IPR003613 GO:0004842|GO:0016567
Ssu3g0690 635 SUPERFAMILY ARM repeat 355 632 IPR016024 -
Ssu3g0690 635 SUPERFAMILY RING/U-box 262 337 - -
Ssu3g0690 635 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 335 IPR013083 -
Ssu3g0690 635 SMART Ubox_2 265 328 IPR003613 GO:0004842|GO:0016567
Ssu3g0690 635 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 16 633 - -
Ssu3g0690 635 Gene3D - 17 130 IPR036537 GO:0007166
Ssu3g0690 635 Pfam Armadillo/beta-catenin-like repeat 386 424 IPR000225 GO:0005515
Ssu3g0690 635 Pfam Armadillo/beta-catenin-like repeat 469 506 IPR000225 GO:0005515
Ssu3g0690 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Ssu3g0690 635 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g0690 635 PANTHER U BOX DOMAIN-CONTAINING 16 633 - -
Ssu3g0690 635 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Ssu3g0690 635 SMART arm_5 549 589 IPR000225 GO:0005515
Ssu3g0690 635 SMART arm_5 467 507 IPR000225 GO:0005515
Ssu3g0690 635 SMART arm_5 508 548 IPR000225 GO:0005515
Ssu3g0690 635 SMART arm_5 385 425 IPR000225 GO:0005515
Ssu3g0690 635 SMART arm_5 426 466 IPR000225 GO:0005515
Ssu3g0690 635 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0690 Ssu-Chr3 16757797 16761757 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0690 23 635 U-box Gene Family AT5G42340 63.622 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0690 - - gmx:100777362 1077.39