Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0685 ATGTCGATCTTCGACGGAGCTTTCACGAACACGCAGCTCTCCAAACACACTTCGATCTTCGGTCTCCGTCTCTGGGTCGTGATCGGAATCCTAATCGGCGTCTTCATCGTCTTCGCCCTCTTCCTCCTCTCCCTCTGCCTCGTCTCTCGCCGGAACCGGCGCCGCTCCGGCGCCGGCGGCTACAAGGTCGCCGGAGACCCCGCCGACAAGGAAATCCACACGATCGTGCACCTCCCCGGCGCCCACATGCTCCGGCCGCCGGCGTCGGGGAAGGTGCCGGAGATCCACGTGGAGATGGGGAAGGCGGAGCACCGGGTGGTGGTGCAGTGTGACAGGGTTTCGAGTGAGGAGAGTAAGGGGACGGTGGGGAGTGGGTGCGAAACGACGTCGTCGTTTGGGAGTGGGAGTGTTGGTGGGCTTGGGCTTGGGCTTGGGCCTGGGCCCGAGGTTTCGCATCTTGGGTGGGGGAGGTGGTACACTCTGAGGGAGCTTGAGGATGCCACTGGTGGGTTGTGTCCGGAAAACGTGGTTGGTGAAGGTGGCTATGGCATTGTCTATCGTGGGGTCCTCAATGATGGTACCAAAGTTGCTGTCAAGAACCTCTTGAATAACAAGGGACAAGCTGAGAAAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTGCGACACAAAAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGAGCCTACAGGATGCTTGTGTATGAATATGTAGACAATGGCAATCTAGAACAATGGCTGCATGGGGATGTTGGAGCTGTAAGCCCTTTGACGTGGAATATACGCATGAACACTATATTGGGAACTGCAAGAGGATTGGCCTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTGAAATCAAGCAACATACTCCTTGATCGCCAATGGAACTCCAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTGTTCTGAGACTAGTTATGTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCAGAATATGCCTGCACTGGAATGCTGACTGAGAAGAGTGATATTTATAGCTTTGGGATACTTATCATGGAGATAATTACTGGAAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGATTGGTTGAAGATTATGGTTGGAAATCGAAGATCCGAGGAAGTAGTTGATCCTAAGCTCCCTGAGATGCCATCTTCAAAGGCTCTTAAACGTGCCTTGTTGATTGCTCTTCGGTGTGTTGATCCTGATGCAACAAAGAGGCCAAAAATGGGACATGTGATCCACATGCTTGAAGCAGACGACTTGTTATTCCACAATGAACAAACAACTGAGGGAGAGTCTTCCCGTTCCCATCATGATTATAAGGACTCCAATTTTGGCAAGAGAACAGATGGAGGTGTCATTGATCGAAGTGAAGATGCTAGTAGTAGAAATCATCAGCCCACTACATGA 1488 0.5027 MSIFDGAFTNTQLSKHTSIFGLRLWVVIGILIGVFIVFALFLLSLCLVSRRNRRRSGAGGYKVAGDPADKEIHTIVHLPGAHMLRPPASGKVPEIHVEMGKAEHRVVVQCDRVSSEESKGTVGSGCETTSSFGSGSVGGLGLGLGPGPEVSHLGWGRWYTLRELEDATGGLCPENVVGEGGYGIVYRGVLNDGTKVAVKNLLNNKGQAEKEFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGAVSPLTWNIRMNTILGTARGLAYLHEGLEPKVVHRDVKSSNILLDRQWNSKVSDFGLAKLLCSETSYVTTRVMGTFGYVAPEYACTGMLTEKSDIYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKIMVGNRRSEEVVDPKLPEMPSSKALKRALLIALRCVDPDATKRPKMGHVIHMLEADDLLFHNEQTTEGESSRSHHDYKDSNFGKRTDGGVIDRSEDASSRNHQPTT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0685 495 PANTHER OS01G0323000 PROTEIN 1 490 - -
Ssu3g0685 495 SUPERFAMILY Protein kinase-like (PK-like) 151 443 IPR011009 -
Ssu3g0685 495 CDD STKc_IRAK 177 443 - -
Ssu3g0685 495 ProSiteProfiles Protein kinase domain profile. 171 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0685 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Ssu3g0685 495 SMART serkin_6 171 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0685 495 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 490 - -
Ssu3g0685 495 Gene3D Phosphorylase Kinase; domain 1 155 246 - -
Ssu3g0685 495 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Ssu3g0685 495 MobiDBLite consensus disorder prediction 453 488 - -
Ssu3g0685 495 Gene3D Transferase(Phosphotransferase) domain 1 247 459 - -
Ssu3g0685 495 Pfam Protein kinase domain 175 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0685 495 MobiDBLite consensus disorder prediction 453 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0685 Ssu-Chr3 16465047 16468691 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0685 106 443 Receptor kinase-like Gene Family AT4G02010 44.152 5.16e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Ssu3g0685 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0685 - - gmx:100800724 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0685 3 16465047 16468691 Ssu4g2838 4 72444489 72447375 PCT