Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0683 ATGGCCACCGCTCCTTCGCTTCTACACTCATCTGGGTCTTCATTTCTCGCTCAATTTCGTGCCTTTccattctcttcttcttcttcttcactgTTTCCTCATGGAAACAGGCATGGGAATGCAGTGGTGTCCGTGAAGGCCACTGCTTCTGGGGTTGTGTTGGTGGAGAAGTCTGAGGCAGAGAAGGCCAATAGGCTCAAAACAACTTACAATGAGAAAATTGTTCCCTTGCTCTTGGAAGAGTTCTCTTACACCAACAAACACCAGGTGCCTAAACTTGAGAAGATTGTGGTTAACTGTGGTATTGGAGATGCTGCACAAAATGCAAAGGGTTTGGATGCGGCAATAAATGATCTAGCACGGATCACAGGGCAGAGACCTGTTAAGACTCGGGCCAGGGCTTCTCTTGCCACCTTTAAGATCAGGGAAGGTCAACCACTTGGGATTGCTGTGACACTGAGAGGAAATatGATGTACTCATTCCTAGACCGAGTTATCAACTTGGGACTTCCTAGGACAAGAGATTTCCAAGGTGTGAACCCTAACAGCTTTGATGGGCATGGGAATTACAGCATTGGCGTTAAGGACCAGGGTGTGTTCCCAGAGATCAGATCTGATGTTGTTGGTAAGCCTAGGGGAATGGATATCTGCATCGTGACGACGGCTAATACTGATCAAGAAGCACAAAGATTACTGGTTCTTATGGGTATGCCCTTCAGAGAGGGAGGTGGTCCTGCCACCGCGGCTCGGAAGAAGAAGCTCAAGTCTCATCATTTTGATGGAAAATCAAAGGGAAAAGGAAGGAAGTAA 810 0.458 MATAPSLLHSSGSSFLAQFRAFPFSSSSSSLFPHGNRHGNAVVSVKATASGVVLVEKSEAEKANRLKTTYNEKIVPLLLEEFSYTNKHQVPKLEKIVVNCGIGDAAQNAKGLDAAINDLARITGQRPVKTRARASLATFKIREGQPLGIAVTLRGNMMYSFLDRVINLGLPRTRDFQGVNPNSFDGHGNYSIGVKDQGVFPEIRSDVVGKPRGMDICIVTTANTDQEAQRLLVLMGMPFREGGGPATAARKKKLKSHHFDGKSKGKGRK 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0683 269 SUPERFAMILY RL5-like 65 240 IPR022803 -
Ssu3g0683 269 MobiDBLite consensus disorder prediction 244 269 - -
Ssu3g0683 269 MobiDBLite consensus disorder prediction 250 269 - -
Ssu3g0683 269 ProSitePatterns Ribosomal protein L5 signature. 119 135 IPR020929 GO:0003735|GO:0005840|GO:0006412
Ssu3g0683 269 Hamap 50S ribosomal protein L5 [rplE]. 63 241 IPR020930 GO:0003735|GO:0005840|GO:0006412
Ssu3g0683 269 Gene3D - 57 241 IPR022803 -
Ssu3g0683 269 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 59 241 IPR002132 GO:0003735|GO:0005840|GO:0006412
Ssu3g0683 269 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 59 241 - -
Ssu3g0683 269 Pfam Ribosomal protein L5 86 142 IPR031310 -
Ssu3g0683 269 Pfam ribosomal L5P family C-terminus 146 239 IPR031309 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0683 92 219 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 26.562 4.30e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0683 K02931 - gmx:100818896 473.781