Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0676 ATGGCGGAAGATTGGGATCTACATGCGGTGGTTAGAGGCTGCTCCACCGTCACATCATCCTCcgtgtcttcttcttcttcttccgcTACCTCTGGCTTTGGCTCTTGTTACTTGCACCACCCTgaagcttcttcttcttctggcTTCTCCATCTTCAAGGGTGAACAAGGAGGCCAGGTTTTGTCGCTTTCTGCGTACCCCTTTGAGGCGAGGAGCTCCATTGAGGAGTTGCATGAGCTTTGCAAGCCTTTCTTCTCCAAATCTCAGCCCCTCTCGTTGCAAGCCTCTTCCCCCTTGTCCTCACTCTCTTCTTATTCCTCTGCAACACCCAAATCAGTTTCAACGCAGGAGAAACAACCGCAGCGGAATAAGCAGCCACAAGCTGTCACCACCCCACGATCTAAAAGAAGGAAGAACCAGCTTAAGAAAGTTTGTCAAGTGCCAGTTGAGAATCTCTCCTCAGACATATGGGCATGGAGGAAATATGGCCAGAAACCCATAAAGGGGTCTCCATATCCAAGGGGGTACTATAGATGTAGCAGCTCAAAAGGGTGTTTGGCAAGGAAACAGGTTGAGAGGAACAGATCAGACCCAACCATGTTTATAGTGACTTATACTGCCGAGCACAACCACCCTGCTCCTACTCACAGAAACTCTCTTGCTGGCTCCACACGCCAGAAGCCATTGGCACCCCAAACTGCCACCACTGAAGACTCTGACAAGAGCAAGAGCCTCACAAAACCCACTTCCCCTGCCTCCTCAGGGGCAGAGGAAGAGGCTCCAACTCAAGGGGAAAAATCTGAGAgcagagaagagaaagaggatgTGATGGATGATGAGGAAGAAGATGAATTTGGGTTGTCTGATATGGTGCTCACAGATGATTTCTTTGAAAGTTTGGATGAACTGAGTCAACTCACTGCTCCTTCTGTTGTCACTGGAGACTGCTTCAGTGACCCCTTTTCAGCCATTGCAACAATCCCTTCTTGGGTGGCTAGTAGTGCTGCTACTGCTGGTGGATGTAGATGA 1029 0.4645 MAEDWDLHAVVRGCSTVTSSSVSSSSSSATSGFGSCYLHHPEASSSSGFSIFKGEQGGQVLSLSAYPFEARSSIEELHELCKPFFSKSQPLSLQASSPLSSLSSYSSATPKSVSTQEKQPQRNKQPQAVTTPRSKRRKNQLKKVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRSDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLAPQTATTEDSDKSKSLTKPTSPASSGAEEEAPTQGEKSESREEKEDVMDDEEEDEFGLSDMVLTDDFFESLDELSQLTAPSVVTGDCFSDPFSAIATIPSWVASSAATAGGCR 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0676 342 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 332 - -
Ssu3g0676 342 ProSiteProfiles WRKY domain profile. 148 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0676 342 Gene3D WRKY domain 137 207 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0676 342 MobiDBLite consensus disorder prediction 101 134 - -
Ssu3g0676 342 Pfam WRKY DNA -binding domain 155 212 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0676 342 MobiDBLite consensus disorder prediction 274 289 - -
Ssu3g0676 342 MobiDBLite consensus disorder prediction 211 257 - -
Ssu3g0676 342 MobiDBLite consensus disorder prediction 101 143 - -
Ssu3g0676 342 SUPERFAMILY WRKY DNA-binding domain 151 214 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0676 342 SMART WRKY_cls 153 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0676 342 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 332 IPR044810 GO:0003700
Ssu3g0676 342 MobiDBLite consensus disorder prediction 208 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0676 Ssu-Chr3 16193524 16195071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0676 1 340 WRKY Transcription Factor Family AT4G01250 45.352 2.13e-84 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0676 WRKY 3.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0676 K13425 - gmx:100798084 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0676 3 16193524 16195071 Ssu7g0832 7 16675560 16676908 ECH
Ssu3g0676 3 16193524 16195071 Ssu3g0676 3 16193524 16195071 ECH
Ssu4g2850 4 72929861 72930229 Ssu3g0676 3 16193524 16195071 ECH
Ssu3g0676 3 16193524 16195071 Ssu4g2850 4 72929861 72930229 PCT