Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0672 ATGGAAAGCCAAGACCCACCAAACCCACCACCCCCTCCATTAATGTTTCCACCCCAAAACAACAACCCCTTCCTCTTCACGCCTTCGGTGTTGCAAAACCCTTTGGATCCTCAAGAGCAAGGCCTATGTGACATTGATTGGGGTAACCTTTTCTCTGCCCAAAACAGCTTATTGCTTAACGGGGATGCCAAGGACACTATTGAATGCGCTTCTTCGTCTTCTCTCGTGGCTGAAAGTAAAGGAGCTCGTGAGGAGGAAAAGGGAAACAAGGAGAAAAGGAGAGCGGGGAGGATGAAGAAAACAACACGAGTGCCAAGGTTTGCGTTTCAAACGAGAAGTGCAGATGATATTTTGGATGATGGTTATCGCTGGAGGAAATATGGGCAGAAAGCTGTGAAGAATAGCACATATCCAagAAGCTACTACCGCTGCACGCATCACACATGCAATGTGAAGAAACAAGTGCAAAGGCTATCCAAAGACACAAGCATCGTGGTGACGACTTACGAGGGAATTCACAACCACCCATGCGAGAAGCTGATGGAAACTCTAACCCCACTTCTGAAGCAAATACAGTTTCTTGCTAGCTTGTAA 594 0.468 MESQDPPNPPPPPLMFPPQNNNPFLFTPSVLQNPLDPQEQGLCDIDWGNLFSAQNSLLLNGDAKDTIECASSSSLVAESKGAREEEKGNKEKRRAGRMKKTTRVPRFAFQTRSADDILDDGYRWRKYGQKAVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQIQFLASL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0672 197 MobiDBLite consensus disorder prediction 1 24 - -
Ssu3g0672 197 MobiDBLite consensus disorder prediction 1 19 - -
Ssu3g0672 197 Gene3D WRKY domain 103 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0672 197 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 39 193 IPR044810 GO:0003700
Ssu3g0672 197 SUPERFAMILY WRKY DNA-binding domain 111 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0672 197 ProSiteProfiles WRKY domain profile. 113 178 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0672 197 Pfam WRKY DNA -binding domain 119 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0672 197 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 39 193 - -
Ssu3g0672 197 MobiDBLite consensus disorder prediction 73 101 - -
Ssu3g0672 197 SMART WRKY_cls 118 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0672 Ssu-Chr3 16107786 16109295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0672 91 197 WRKY Transcription Factor Family AT5G41570 71.963 2.84e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0672 WRKY 2.1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0672 - - gmx:100796481 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0672 3 16107786 16109295 Ssu3g0672 3 16107786 16109295 ECH
Ssu3g0672 3 16107786 16109295 Ssu4g2860 4 73349979 73364483 PCT