Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0665 ATGTCCCCTTCATCCATCCCCTCCCCTCACCCCTATTTCGTCCACATCGGCCTCGGCTACTCCATCGCCATAGCCCTCgccttcctcttcctcctctccaCCCTCATCCTCTCCTCCTACCTCTGCTGCCGCGCCCACCGCAACCGCACCCAAACCACCGCCGCCGCGGCCAACGTCGCTGCCCACGACGGGGTCGTCCTGCCGCGCGTCATCTTCGTGGCGGaggacgacgacgacgacggcGGCGAGGCGAGCGTCGCGGTGGGGCTCGACCAGAGCGTGATAAACTCCTACCCGAGGTTCCAGTTCGGCGGGGACGGCGCGAGGAACAACAACACCACGTGCTCCATATGCCTGTGCGAGTACAAGGACTCGGAGATGCTGAGGATGATGCCCGAGTGTCGCCATTACTTCCACCTCTGCTGCCTCGATTCGTGGTTGAAACTCAACGGGTCCTGCCCCGTTTGCCGCAACTCCCCGCTACCGACGCCGCTTTCCACGCCGCTGCAGGAGGTGGTCCCGCTCTCTCAGTATGCTGCTGATAGGAGGCGAAATAggtga 561 0.5847 MSPSSIPSPHPYFVHIGLGYSIAIALAFLFLLSTLILSSYLCCRAHRNRTQTTAAAANVAAHDGVVLPRVIFVAEDDDDDGGEASVAVGLDQSVINSYPRFQFGGDGARNNNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRNR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0665 186 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Ssu3g0665 186 PANTHER RING-H2 FINGER PROTEIN ATL67 11 184 IPR044289 GO:0016567|GO:0016740
Ssu3g0665 186 SUPERFAMILY RING/U-box 114 162 - -
Ssu3g0665 186 PANTHER RING-H2 FINGER PROTEIN ATL67 11 184 - -
Ssu3g0665 186 Pfam Ring finger domain 114 157 IPR001841 -
Ssu3g0665 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 161 IPR013083 -
Ssu3g0665 186 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0665 Ssu-Chr3 15937322 15937882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0665 1 176 C3H Transcription Factor Family AT5G07040 42.135 9.03e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0665 - - gmx:100793332 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0665 3 15937322 15937882 Ssu4g2865 4 73405763 73406329 PCT