Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0664 ATgtcctctccctctccctccgTCTCCACCGTGCCACCCTCGAGCCTCACCCCCACCAATGACCTAGACATATTCACTAGGTTGTTCCTATTAttcatctttctctctctcttcattcgCGTATGTTATGTCTATATTTCCATACGCCGCGATATATGGACCCATCATCATGGCGATGGTAACGATCAAAACAACCTCTCGGGACTCCCCATTAGCATTATAAACTCCTACCACACTTTCCCTTATGGCAAAACCAATGGGGCAACAACTTGCGCCCATGACACCACATGTTCCATATGCATTTCGGATTACGAGGAATCGGAGATGCTAAGGATGATGCCACAATGTCGCCACTACTTTCACCGAGATTGTGTTGACAAGTGGTTGAAGGTTAATGCGTCGTGTCCCGTTTGCAGGAACTCGCTGGTGGAATCTAGTAATAAATAA 447 0.4161 MSSPSPSVSTVPPSSLTPTNDLDIFTRLFLLFIFLSLFIRVCYVYISIRRDIWTHHHGDGNDQNNLSGLPISIINSYHTFPYGKTNGATTCAHDTTCSICISDYEESEMLRMMPQCRHYFHRDCVDKWLKVNASCPVCRNSLVESSNK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0664 148 SUPERFAMILY RING/U-box 92 144 - -
Ssu3g0664 148 Pfam Ring finger domain 96 139 IPR001841 -
Ssu3g0664 148 CDD RING-H2_PA-TM-RING 96 139 - -
Ssu3g0664 148 PANTHER RING-H2 FINGER PROTEIN ATL67 8 147 IPR044289 GO:0016567|GO:0016740
Ssu3g0664 148 SMART ring_2 97 138 IPR001841 -
Ssu3g0664 148 ProSiteProfiles Zinc finger RING-type profile. 97 139 IPR001841 -
Ssu3g0664 148 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 144 IPR013083 -
Ssu3g0664 148 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 8 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0664 Ssu-Chr3 15920268 15920714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0664 7 142 C3H Transcription Factor Family AT2G34990 32.192 7.36e-19 79.3