Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0647 ATGTTCAAATTCCTGAAAGAGGTCGTTGGTGGATCCGGAACCGGCCTCAAGGATCTCCCTTACACCGTCGCCGAACCTTACCCTTCCGCTTGGGGCTCCTGGACTCATTCTCGCGGCACCTCCAAGGACGACGGTTCTCCCGTCTCGGTGTTCTCTCTCTCCGGCTCCAATGCTCAGGACGGACACTTAGCCGCCGCGCGCAACGGCGTCAAGCGTCTTCGAACTGTTAGGCATCCGAATATCTTGTCGTTTCTTCACAGCGCGGAGATCGAGACTTACGATGCAGGTTCTCCTAAGGTTACGATATATATTGTGACCGAGCCTGTGATGCCGTTATCTGAGAAGATCAAGGAGTTAGGGCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGTCTTCATCAAATAGCTAAAGCTGTGAGCTTCTTGAATAACGATTGTAAACTTGTTCATGGTAATGTTTGCTTGGCTAGTGTTGTTGTGACACCAACTTTGGACTGGAAGCTTCATGCTTTTGATGTTCTATCAGAGTTTGATGGGAGCAGCGAAATGTCTTCTGGCCAAATGCTGCAATATGCATGGCTTGTTGGATCACAATACAAACCGATGGAGTTGGCAAAATCAGACTGGGATGTAATTAAGAAGTCTCCTCCATGGGCCATTGATTCTTGGGGCATGGgtTGCCTAATCTATGAGGTATTCTCTGGTCTGAGGTTGGGCAAAACAGAGGAGTTACGCAGCACTGGTTCCATTCCCAAGTCTCTGCTTCCAGATTACCAACGATTATTGAGTTCCATGCCCTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGagtattttcaaaataagttggTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTGGAGAAAGACACCTTCTTTCGCAAGCTTCCAAATTTAGCTGAGCAACTTCCTCGCCAGATAGTGTTGAAGAAGTTAGTACCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCCGCCTCTGCTTTGACTGcattgttgaaaatgggttccTGGCTTTCAACTGAGGAGTTTAATGTCAAGGTGCTTCCAACAATTGTAAAACTCTTTGCCTCCAATGATCGAGCTATTAGAGTTGGCCTTCTTCAACATATTGATCAATATGGAGAGTCTTTATCGGCGCAAGTTGTTGATGAGCAAGTTTACCCTCATGTTGCTAGTGGGTTCTCCGATACATCTGCTTTTCTCAGGGAACTGACTCTTAAGTCTATGTTAATTCTGGCTCCGAAGTTGTCTCAAAGGACCATGTCAGGGTCATTATTGAAGTATCTGTCAAAGTTGCAGGTTGATGAAGAACCAGCAATTAGAACAAATACTACCATATTATTAGGCAATATTGGAAGTTACTTAAATGAAGGAACAAGAAAAAGAGTTTTGATTAATGCATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGGTATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAGGTTATGTTTCATTATGAGCTTTTATTTCTTGTATCCCCTTTACCATGCGAAGATGAGGAATTCTAGTGACTTAATTTATtcccttaattaa 1698 0.424 MFKFLKEVVGGSGTGLKDLPYTVAEPYPSAWGSWTHSRGTSKDDGSPVSVFSLSGSNAQDGHLAAARNGVKRLRTVRHPNILSFLHSAEIETYDAGSPKVTIYIVTEPVMPLSEKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTPTLDWKLHAFDVLSEFDGSSEMSSGQMLQYAWLVGSQYKPMELAKSDWDVIKKSPPWAIDSWGMGCLIYEVFSGLRLGKTEELRSTGSIPKSLLPDYQRLLSSMPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLVPLLASALEFGSAAASALTALLKMGSWLSTEEFNVKVLPTIVKLFASNDRAIRVGLLQHIDQYGESLSAQVVDEQVYPHVASGFSDTSAFLRELTLKSMLILAPKLSQRTMSGSLLKYLSKLQVDEEPAIRTNTTILLGNIGSYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSYYDITEVATRILPNVVVLTIDPDRLCFIMSFYFLYPLYHAKMRNSSDLIYSLN 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0647 565 SUPERFAMILY ARM repeat 293 536 IPR016024 -
Ssu3g0647 565 ProSiteProfiles Protein kinase domain profile. 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0647 565 Gene3D - 282 546 IPR011989 -
Ssu3g0647 565 Gene3D Phosphorylase Kinase; domain 1 12 107 - -
Ssu3g0647 565 PANTHER - 1 536 - -
Ssu3g0647 565 SUPERFAMILY Protein kinase-like (PK-like) 38 287 IPR011009 -
Ssu3g0647 565 Gene3D Transferase(Phosphotransferase) domain 1 109 280 - -
Ssu3g0647 565 PANTHER SCY1-RELATED S/T PROTEIN KINASE-LIKE 1 536 - -
Ssu3g0647 565 SMART serkin_6 2 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0647 Ssu-Chr3 15642499 15649116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0647 70 291 MAP Kinase Kinase Kinase AT5G66850 24.786 7.67e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK SCY1_SCYL1 Ssu3g0647 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0647 K08876 - gmx:100782748 1019.22