Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0646 ATGGTTTCCCTTTCGACCACCCCTTTTCTACCCTTCACTGCACAAAACGCTTCCACTAGAATCCCTCCTCCCAATTCATTATATTACAGCAAACACCGTAACAAGGATCACAGGAAGGTTGTCTGCGCCTGCATCGCCCCTCCGCAAAACTTCAAGAGCCAAGACATTAATTTCAATGGTGCGTCCAAATCAGAACAATTAAGCACAGCGCGGGATCACGAGGATGATTCTGATGTTCTTATTGAGTGTAGAGATGTGTACAAGTCTTTTGGGGAAAAGAAAGTGTTAAATGGTGTTAGCTTCAAGATCAGGGATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTGAAGATCATTGCAGGACTTCTTGCTCCGGACAAGGGGCATGTTTATATTCGAGGTAAAAAGAGAGCTGGTTTAGTAAGCGATGACGGCATATCTGGTCTTCGTATTGGATTAGTTTTCCAAAGTGCTGCACTCTTTGATTCTTTGACTGTTCGTGAAAATGTTGGTTTTCTCTTGTATGAACACTCAAGCATGTCTGAGGACCAGATATCAGAGATTGTCAAAGAAACCTTGGCTGCAGTTGGATTGAAGGGAGTCGAGGATCGGTTGCCTTCTGAGTTATCAGGTGGGATGAAAAAGCGAGTTGCTTTAGCTCGATCTATTATTTGTGACACCACAAAGGAATCAATAGAGCCAGAGGTGCTCTTGTATGATGAACCAACTGCTGGACTTGATCCCATTGCATCTACTGTTGTTGAGGATCTGATTCGCTCTGTGCACATAAAAGGACAAGACGCGTGTGGAAAACCTGGGAATATTGCATCTTATGTGGTTGTTACTCACCAACATAGTACCATTAAAAGAGCCATTGATAGGTTGTTGTTTCTTCACAATGGAAAGATTGTTTGGGAAGGAATGACTCATGAATTTACAACTTCAACGAATCCAATTGTTCAGCAGGTTAGTTGGTTTGCTTTAAAGGTGTTAACAATGAGTTGTTTCTGA 1032 0.4254 MVSLSTTPFLPFTAQNASTRIPPPNSLYYSKHRNKDHRKVVCACIAPPQNFKSQDINFNGASKSEQLSTARDHEDDSDVLIECRDVYKSFGEKKVLNGVSFKIRDGEAVGIIGPSGTGKSTVLKIIAGLLAPDKGHVYIRGKKRAGLVSDDGISGLRIGLVFQSAALFDSLTVRENVGFLLYEHSSMSEDQISEIVKETLAAVGLKGVEDRLPSELSGGMKKRVALARSIICDTTKESIEPEVLLYDEPTAGLDPIASTVVEDLIRSVHIKGQDACGKPGNIASYVVVTHQHSTIKRAIDRLLFLHNGKIVWEGMTHEFTTSTNPIVQQVSWFALKVLTMSCF 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0646 343 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 28 333 - -
Ssu3g0646 343 SMART AAA_5 105 309 IPR003593 -
Ssu3g0646 343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 81 332 IPR003439 GO:0005524
Ssu3g0646 343 Pfam ABC transporter 96 251 IPR003439 GO:0005524
Ssu3g0646 343 Gene3D - 67 333 IPR027417 -
Ssu3g0646 343 CDD ABC_Org_Solvent_Resistant 81 329 - -
Ssu3g0646 343 PANTHER PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 28 333 - -
Ssu3g0646 343 ProSitePatterns ABC transporters family signature. 216 230 IPR017871 GO:0005524
Ssu3g0646 343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0646 Ssu-Chr3 15629328 15632513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0646 87 325 Calmodulin-binding Proteins AT2G36910 29.200 2.13e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0646 - - gmx:100783283 599.356