Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0640 ATGGAATTCGATGCCGCGATTCCCGTGTCCCGAGAGCACCTCCCTCAAGATGCAATGTGGCAAATTAACTTGAGGTCAAGTGAAACAATGGAATCAGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATTAGGACTGGCCTTTGTAGATTTGGAGCAACATGTCGATTTAATCATCCTCCGAACAGGAAGCTGGCTATTGCTGCTGCACGGATGAAAGGTGAATTCCCAGAAAGGATAGGACAGCCAGAATGCCAGTACTATTTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAGAGACAAGGCTGGGATTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGACCAAATGAGCTTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCATCATCCTCAACCAAGCAATATGGTACTTTCCATGCGAAGTTCTCCTGTTTATCCTACAGTCCATTCTCCAACTACGCCAGGTCAGCAGTCATATGCGACAGGAATTACAAATTGGTCTAGTTCATCATATATTCCTAGCCCACGTTGGCAAGGCCCTTCAAGTTATGCGCCTTTAATTCTACCTCAGGGAATGGTTTCAGTGCCTGGGTGGAGTGCGTACAGTGGTCAAATGGGATCAGACAACAGTCCACAGCAAACAATGGGAAATGGCCAAAGCTATGGAACTTCTCGGCAAAGTGAACCAGCAAATGCAGGATCCCAGGGGGCATATTCTCAATTTCGTTCTGGCTCTGTTCCTGTAGGGTTCTATGCGTTGCAGAGGGAGAACATATTTCCTGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGAGATTGCAAGTTTGGTGCAGTCTGTCGTTTCCATCATCCACGTGAAAGGATGATTCCTGCTCCTGACTGTGTTTTGAGTCCCATAGGCCTTCCTTTACGTCCTGGAGAGCCTTTGTGTGTATTCTATTCACGTTATGGCATATGCAAATTTGGGCCTAGTTGCAAGTTTGATCACCCGATGGGAGTCTTCACCTATAACATTCCTGCATCACCTTCAGCTGATGCCCCAGGACGGCGAATGTTAGGTTCTTCATCAGGAACTGCTGCATTAAATTTATCATCAGAAGGACTTGTTGAGTCAGGCTCAGCAAAGCCAAGGAGGCTTTCATTGTCAGAGACTAGACAGATTTCTTCTGGTGATGATAACATTGATGAAGAGGGATAA 1284 0.4517 MEFDAAIPVSREHLPQDAMWQINLRSSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCRFHHPRDKAGIAGRVALNILGYPLRPNELECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVHSPTTPGQQSYATGITNWSSSSYIPSPRWQGPSSYAPLILPQGMVSVPGWSAYSGQMGSDNSPQQTMGNGQSYGTSRQSEPANAGSQGAYSQFRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERMIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGVFTYNIPASPSADAPGRRMLGSSSGTAALNLSSEGLVESGSAKPRRLSLSETRQISSGDDNIDEEG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0640 427 ProSiteProfiles Zinc finger C3H1-type profile. 287 315 IPR000571 GO:0046872
Ssu3g0640 427 SUPERFAMILY CCCH zinc finger 336 360 IPR036855 GO:0046872
Ssu3g0640 427 SUPERFAMILY CCCH zinc finger 290 316 IPR036855 GO:0046872
Ssu3g0640 427 MobiDBLite consensus disorder prediction 228 263 - -
Ssu3g0640 427 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Ssu3g0640 427 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Ssu3g0640 427 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Ssu3g0640 427 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Ssu3g0640 427 SMART c3hfinal6 287 314 IPR000571 GO:0046872
Ssu3g0640 427 SMART c3hfinal6 333 360 IPR000571 GO:0046872
Ssu3g0640 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 289 314 IPR000571 GO:0046872
Ssu3g0640 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 156 IPR000571 GO:0046872
Ssu3g0640 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Ssu3g0640 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 335 360 IPR000571 GO:0046872
Ssu3g0640 427 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Ssu3g0640 427 MobiDBLite consensus disorder prediction 393 427 - -
Ssu3g0640 427 Gene3D - 279 362 - -
Ssu3g0640 427 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Ssu3g0640 427 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Ssu3g0640 427 Gene3D - 115 163 - -
Ssu3g0640 427 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 426 - -
Ssu3g0640 427 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Ssu3g0640 427 PANTHER PROTEIN PHOSPHATASE RELATED 11 426 - -
Ssu3g0640 427 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Ssu3g0640 427 ProSiteProfiles Zinc finger C3H1-type profile. 333 361 IPR000571 GO:0046872
Ssu3g0640 427 Gene3D - 37 114 - -
Ssu3g0640 427 SUPERFAMILY CCCH zinc finger 132 157 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0640 Ssu-Chr3 15521939 15529276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0640 19 423 C2H2 Transcription Factor Family AT3G02830 63.350 3.30e-178 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu3g0640 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0640 - - gmx:100786261 883.634