Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0632 atgGAACAAGACAACCTTAACAACAGCAACAATTGTGATGACGAAACCTTTGTTTCTGACTCCAAAGGAGCAAAAAAAAGCATTGCTGAGAGAAGGGGTTTCAATTCCAATGCCGCAAGAATCAACACAGCATTGTTTCGCACTGCAACCTCAACAACCCCTTCACCGTCCCCTGCTGCTCGATCACCTCGTCTCACCATCCCTTCTGGCATTAGCCCCACTGCGTTGCTTGACTCTCCCATCATGCTTCCCAATTCTCAGgcCATTCCATCTCCCACCACTGGCACTTTCTTCATGCTGCCACCTCTCACTCCTGAGGGATCAATGGTCACACTTGAACAAGGGAATGTGGATGTGTCAACCGCCTCTGATGCTGCTGCCTCCTTCAAATTCAAGCCTGATACTCATTTAGATCCTAATCCTTTGCCTCCTTACTCTGGTTCTCTAAATCAGGTTTCTAGTAATTTCCACTCGGTAAAGGGAGGAAATGCTCAAGTTCATCCACCATTAGATTTTTCATTCCCAGCAGATTTTTCAGAAGGTCATTCTGTGAAAAATAGTGAAGTCCATTCGTACAATGATATGAAAATGGTAAATGATGCGATTGTAAATATCAATAATGTTGAGATGCCAATGTCTGGCTCTGAGGAAGTAAGTGATGAAAGCGCTCTGCCGAAAAATGCCATCCATGGTGTGGATTTTGGAGGGCAACCTGTTTCAGAAGGAGAACAGAAAGAGACATCCCATGTGACAGGAGCGGTAAGGACCTCAGAGGATGGTTATAATTGGAGGAAATATGGACAAAAACAGGTAAAAGGTAGTGAGTATCCCCGAAGCTATTACAAATGCACACAACCTAACTGTCAGGTCAAGAAAAAGGTGGAACGGTCCCATGACGGCCAAATAACGGAAATTATTTACAAGGGTGCTCATAACCATGCAAAACCACACCCTAGTCATCGAGCATCAGCACTTTCTACTGATGAGAATTCAGACATGGGTGAGGACAGTACTTTTGCTAAAGTTGATGGAGGGTTCATCTGGAGAAATATTCAGTCAGGATTAAAAGATACAAAACACAGTTTAGATTGGAAGGCTGATGGTCAGGAAAGGACATCATCAACTTCTGTTGTGACTGAGCTTTCAGACCCTATATCGACTAACAAAGCTAAGTCTCTAGGTATGTTTGAATCGGAGGACACTCCAGAGCTTTCTTCTACACTTGCTAGTCATGATGGTGATGAAGATGGAGCCACTCAAGCACTCATGTCAGTTGAAGACGAAGCTGAGAATGATGAATCAGATTcaaaaagaagGAAGAAAGAGAACTATGCAGTTGAATCAAGTATGCCTCCTAGGGCTGTTCGTGAGCCAAGAGTGGTAGTCCAAATTGAGAGTGACGTGGACATACTTGATGATGGTTATCGCTGGCGTAAGTATGGACAAAAGGTTGTCAAAGGAAATCCAAATCCTAGGAGCTACTACAAATGCACAAGTGCTGGATGTACGGTAAGGAAACACGTGGAAAGGGCTTCACACAATCTAAAATATGTCATTACTACTTATGAGGGAAAGCATAATCATGAAGTGCCTACTGCTAGAACCAACAATCAGATAAACTCAAGTGATGGTGGTTTACCTCCCAATGGTGCTAGTGGGCAAGTGGCTCTTACATTACCGGGGAGTGCCGGCAATCCAAAGCCTGAAACTCATCAAACTCTTGCACATCATTTTGATAGAAAACCTGAATTTAGCAATGAGTTTCTCAGGCCTAGTTTGGTTGGAGGTTTCAGTAATGACATGAAGTTTGGGCCTTCTTCCCTTTGCCAAATGAAGTATCCTTCCTTGAATAACACAATGTCTTATGGCTCCTATGGACTGAACCCTGAACGTTGTGCTGCCCCTCAAGCTGGATCCATTGCCTCAATGTTCCCTGATTTTCCAATGCCACTACCATTGAGTCTTCCCTCATCTGGAAATTTTTCACTTGCTGGACTTAATTTCAACTGTATGAAACCAATGAATCCTGTTCAGTCCTTTCTTTCGGGGCAGCAGGTGAAGGACATTGATACAGGGTTCCTGAGGCCTAAACAGGAACAGAAGGATGATATTATATATGGCTCGTGCATGCCCCCACTAGATCATGCAAATGCTTCACTCACTTCTTCAGCATCATCATCCATTTATCAACGTGTCATGCAAAATTTCCCTTCTTAA 2217 0.433 MEQDNLNNSNNCDDETFVSDSKGAKKSIAERRGFNSNAARINTALFRTATSTTPSPSPAARSPRLTIPSGISPTALLDSPIMLPNSQAIPSPTTGTFFMLPPLTPEGSMVTLEQGNVDVSTASDAAASFKFKPDTHLDPNPLPPYSGSLNQVSSNFHSVKGGNAQVHPPLDFSFPADFSEGHSVKNSEVHSYNDMKMVNDAIVNINNVEMPMSGSEEVSDESALPKNAIHGVDFGGQPVSEGEQKETSHVTGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGAHNHAKPHPSHRASALSTDENSDMGEDSTFAKVDGGFIWRNIQSGLKDTKHSLDWKADGQERTSSTSVVTELSDPISTNKAKSLGMFESEDTPELSSTLASHDGDEDGATQALMSVEDEAENDESDSKRRKKENYAVESSMPPRAVREPRVVVQIESDVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCTVRKHVERASHNLKYVITTYEGKHNHEVPTARTNNQINSSDGGLPPNGASGQVALTLPGSAGNPKPETHQTLAHHFDRKPEFSNEFLRPSLVGGFSNDMKFGPSSLCQMKYPSLNNTMSYGSYGLNPERCAAPQAGSIASMFPDFPMPLPLSLPSSGNFSLAGLNFNCMKPMNPVQSFLSGQQVKDIDTGFLRPKQEQKDDIIYGSCMPPLDHANASLTSSASSSIYQRVMQNFPS 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0632 738 Pfam WRKY DNA -binding domain 472 529 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 Pfam WRKY DNA -binding domain 258 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 MobiDBLite consensus disorder prediction 236 256 - -
Ssu3g0632 738 ProSiteProfiles WRKY domain profile. 466 531 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 ProSiteProfiles WRKY domain profile. 252 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 Gene3D WRKY domain 244 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 SUPERFAMILY WRKY DNA-binding domain 464 531 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 MobiDBLite consensus disorder prediction 431 446 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 1 33 - -
Ssu3g0632 738 Gene3D WRKY domain 458 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 MobiDBLite consensus disorder prediction 389 408 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 45 65 - -
Ssu3g0632 738 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 7 713 - -
Ssu3g0632 738 SMART WRKY_cls 257 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 SMART WRKY_cls 471 530 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 MobiDBLite consensus disorder prediction 310 337 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 533 555 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 389 453 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 1 17 - -
Ssu3g0632 738 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 713 IPR044810 GO:0003700
Ssu3g0632 738 SUPERFAMILY WRKY DNA-binding domain 254 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0632 738 MobiDBLite consensus disorder prediction 241 255 - -
Ssu3g0632 738 MobiDBLite consensus disorder prediction 533 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0632 Ssu-Chr3 15396879 15400537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0632 1 534 WRKY Transcription Factor Family AT5G56270 41.924 4.91e-104 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0632 WRKY 8.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0632 K18835 - gmx:100800211 1225.69