Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0628 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGACCGCCATCCGTATTCTATAATAGATTGTGAGCCTAAGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAAATTTTGCGGCGAAGGCCATTTCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTCCTTCAGTCCTTGGAGCTTTTTGAggaaaatgagaggaaaaagCTGGCAATCTTCACAGCACTGGCATTCTCCCAGAAGCTATCTGGTCTCCCACCAGAAACTGTGCTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTTATGACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGAtgatcttatttcaattctGAAACGGGGAAAAGTAGAGGATAATCTTTTGGACTTTTTCCCCCCTACAAAAAGATCTAATGAAGCTTTCTCTGAGCATTTCAGcAAGGAAGGACTGGTGGCCTTGGTGGAgtataatgaaaagaaaatttttgaggTGAAACTTAAGGAAATGAAGTCTGCTTTAACAACACAGATAACAGAGGAGGCTGATACATCTGAAGTCATTGAGACTGTGAAGCTGCGAGTTAGAGATGCTAAATTGCCGGACATTGAGGTGGTGCGCATCTTGTGGGATGTTTTAATGGATGCTGTTCAGTGGTCTGGAAAAAATCAGCAACAGAATGCAAATGCAGCCCTTCGTCAGGTAAAAACTTGGGCCGAACTGTTGAATATATTCTGCACCAGTGGGAAACTTGAGCTGGAACTGATGTACAAAGTACAGATGCAATGCTATGAGGATGCTAAACTGATGAAGCTGTTCCCTGAGATTGTTAGATCTCTTTATGACCAGGATGTGCTGGCTGAAGATACCATTCTCCATTGGTTCCGAAAAGGAACAAACACCAAGGGCAGGCAAACCTTTGTGAAGGCGCTGGAACCCTTTGTTAATTGGCTGGAGGAGGCTGAAGAGGAGGAGTAA 1236 0.4272 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLELIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGDRHPYSIIDCEPKREVILPSVIYIQKILRRRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVLQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEDNLLDFFPPTKRSNEAFSEHFSKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEADTSEVIETVKLRVRDAKLPDIEVVRILWDVLMDAVQWSGKNQQQNANAALRQVKTWAELLNIFCTSGKLELELMYKVQMQCYEDAKLMKLFPEIVRSLYDQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0628 411 SMART 542_3 325 410 IPR003307 GO:0005515
Ssu3g0628 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Ssu3g0628 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Ssu3g0628 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Ssu3g0628 411 Gene3D - 253 407 - -
Ssu3g0628 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Ssu3g0628 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Ssu3g0628 411 Coils Coil 121 141 - -
Ssu3g0628 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0628 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 2.53e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0628 - - gmx:100782537 776.548