Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0609 ATGGGGTCTATGAATTTGTTgggtttctctctctctcctcaaGAACACCCTTCTAGTCAAGATCACTCTCAAACGGCACCTTCTCGTTTCGGCTTCAACCCTGATGGAATCTCAAGCACTGATGTAGCAGGAGACTGCTTTGATCTCACTTCTGACTCAACTCCTCATTTACTCAACCTTCCTTCTTATGGCATATACGAAGCGTTTCACAGAAACAATAATATTCACACCACTCAAGATTGGAAGGAGAACTACAATAGCCAAAACTTGCTATTGGGAACTTCATGCAATAACCAAAACATGAACAATAGCCAAcagcagcagcaacaacagCCAAAGCTTGAAAACTTCCTCGGTGGACACTCATTTGGTGATCATGAGCAAACATACGGTGGTAACTCAGCCTCAACAGATTACATGTTTCCAGCTCAGCCTGTAGCGGccggtggtggtagtggtagtggtggcggcgGTGGTAGTACAAGCAACTCTAACTCCATAGGGTTGTCCATGATAAAGACATGGTTAAGGAACCAACCACCACACTcagaaaacaacaacaacaacaacgaaaGTGGTGGCAATAGTAGAAGTAGTGTTCAGACTCTATCACTTTCCATGAGCACTGGTTCACAGTCAAGCTCATCACTGCCCCTTCTTACTGCTAGTGTGGATGGAGAGAGTTCTTCAGATAACAAACAACCACTCACCACGGCTGCACTTGATACCACCCAAACCGGAGGAGCCATTGAAACTGCACCCAGAAAGTCCATTGACACGTTTGGACAAAGAACTTCTATATACCGCGGTGTAAcaagGCATAGGTGGACAGGGAGGTATGAGGCTCATCTATGGGATAATAGTTGTAGAAGAGAAGGACAAACTCGCAAAGGAAGGCAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTACGATTTGGCAGCACTAAAATACTGGGGAACAACTACTACAACAAATTTTCCTATTAGCCACTATGAGAAAGAGTTGGAAGAAATGAAGCACATGACTAGACAAGAGTACGTTGCGTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAAGCGAGGATTGGAAGAGTTGCAGGCAACAAGGATCTCTACTTGGGAACTTTCAGCACACAAGAAGAGGCAGCAGAAGCATATGATGTTGCAGCCATCAAATTCCGAGGACTGAGTGCAGTTACAAATTTTGACATGAGCAGATACGATGTTAAGAGCATACTTGAGAGCACCACTTTGCCAATTGGAGGTGCTGCAAAACGTTTGAAGGAAATGGAGCAGGTGGAACTGAGTGTGGATGGCCATAGAGCGGATCAAGAAGATCATAGCATCATGAACCCTCACTTAACTCAAGGAATCAATAACAACTATGGAGGAGGAACAACCCATCATAACTGGCACAATGCTCTTGCATTCCACCAACCTCAACCTTGCACCACCATACATTACCCTTATGGACAGAGGCTGTGGTGCAAGCAAGAACAACAAGACAATTCTGATGCCTCTCACTCCTTGTCCTATCCAGATATTCATCAACTACAGCTAGGGAATAATAGCACACACAATTTCTTTCACACAAATTCCGGGTTGCACCCTATCATGAGCATGGATTCTGCTTCCATTGACAATAGCTCTTCGTCTAACTCGGTTGTTTATGATGGTTATGGAGGTGGTGGGGGCTATGTGATTCCTATGGGGACTACTACTGTTGTTGCAAGTGATGGTGATCCAAATCAAAGAGGCAATAATGGTTTTGGCGATAATGAGATGAAGGCACTTGGTTATGATAGTGTTTATGGTTCCACTGATCCTTATCATGCACATGCAAGGAACTTGTATTATCTTTCTCAACAGCAATCATCTTCTGTAGATGCAGTCAAGGCTAGTGCATACGATCAAGGATCTGCATGCAATACTTGGGTTCCAACTGCTGTTCCAACTCTTGCACCAAGGTCTACCAGCATGGCTCTATGCCATGGTGCTCCACCTTTCTCGTTATTGCATGAATAG 2088 0.4215 MGSMNLLGFSLSPQEHPSSQDHSQTAPSRFGFNPDGISSTDVAGDCFDLTSDSTPHLLNLPSYGIYEAFHRNNNIHTTQDWKENYNSQNLLLGTSCNNQNMNNSQQQQQQQPKLENFLGGHSFGDHEQTYGGNSASTDYMFPAQPVAAGGGSGSGGGGGSTSNSNSIGLSMIKTWLRNQPPHSENNNNNNESGGNSRSSVQTLSLSMSTGSQSSSSLPLLTASVDGESSSDNKQPLTTAALDTTQTGGAIETAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKEMEQVELSVDGHRADQEDHSIMNPHLTQGINNNYGGGTTHHNWHNALAFHQPQPCTTIHYPYGQRLWCKQEQQDNSDASHSLSYPDIHQLQLGNNSTHNFFHTNSGLHPIMSMDSASIDNSSSSNSVVYDGYGGGGGYVIPMGTTTVVASDGDPNQRGNNGFGDNEMKALGYDSVYGSTDPYHAHARNLYYLSQQQSSSVDAVKASAYDQGSACNTWVPTAVPTLAPRSTSMALCHGAPPFSLLHE 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0609 695 MobiDBLite consensus disorder prediction 1 35 - -
Ssu3g0609 695 ProSiteProfiles AP2/ERF domain profile. 366 424 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 SUPERFAMILY DNA-binding domain 365 426 IPR016177 GO:0003677
Ssu3g0609 695 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 605 - -
Ssu3g0609 695 SUPERFAMILY DNA-binding domain 266 332 IPR016177 GO:0003677
Ssu3g0609 695 CDD AP2 365 426 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 Pfam AP2 domain 366 416 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 Pfam AP2 domain 267 322 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 Gene3D AP2/ERF domain 267 332 IPR036955 GO:0003700|GO:0006355
Ssu3g0609 695 Gene3D AP2/ERF domain 366 426 IPR036955 GO:0003700|GO:0006355
Ssu3g0609 695 PANTHER BNAC02G44180D PROTEIN 5 605 - -
Ssu3g0609 695 PRINTS Ethylene responsive element binding protein signature 406 426 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 CDD AP2 266 332 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 SMART rav1_2 267 336 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 SMART rav1_2 366 430 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 ProSiteProfiles AP2/ERF domain profile. 267 330 IPR001471 GO:0003700|GO:0006355
Ssu3g0609 695 MobiDBLite consensus disorder prediction 96 254 - -
Ssu3g0609 695 MobiDBLite consensus disorder prediction 96 116 - -
Ssu3g0609 695 MobiDBLite consensus disorder prediction 155 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0609 Ssu-Chr3 14999035 15003325 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0609 166 595 AP2-EREBP Transcription Factor Family AT5G17430 54.299 4.99e-135 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu3g0609 AP2 3.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0609 K09285 - gmx:100797584 1130.16