Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0597 ATGAACTACACTGAAGCACAAGGTTCAGTTAATAGGAGTTCTCTCCAGGCGAAAATGGAGGATTCATTGGAGAATTGGGTTTCTCACTTGGATGATGCGTTCAACGAAACTCATGACTCATTTGATGAGCAAGAGTTCCTAAGAGAGATCCTTGAGGAGCCAGAACGTGAAAGGGAACACCCCTCCACAGTCCAAGGTGGTGGGGCTGCCACCAGCCCCACCAACAGCACTGTGTCCTTTGATGAGACTAGCTTCTGTGGGAGGGTCACCACCCTCCACAAAAGCAACAGCTCCAACTCCATCATGTCTTTGAAAAGGTCATGTGCCTCTCCAGCCATGTACCTTCTGTCTTTTGACAACCCAACTGCTGGACCAACCACCCATGAACCTTCCCCCAAGCCTGATCCAGCATTAGGATCTTCCAATAAAAGGACCGCTGCGGTGAAAGATGGGTCTGAACTGGAACCGTGGATGCCCCAACCGAGAAAGAAGGTTAAAAGGCCGTCCGAGATACAGCATCACATAATTGCTGAGAGGAAAAGGAGACAGGAACTGACGGGCAGCATCATAGCGCTTTCAGCAACAATTCCTGGGCTGAAGAAGATGGACAAGGCTTATGTACTTCGGGAAGCTGTCAATTACACAAGGCAACTTCAAGAGCGAGTTAAAGAGTTGGAAAatcaaaacaaagataaaagaatagttTCGGCAACATTCATAAGGAAATCTCAAGCCTCCTCAAATAAAATCACCAGCAACTGTGAAACGAACACAGAATCACTATTTGAGGTTGAAGCAAGAGTCCTAGAGGAGGAAGTACTCATTGGAATCCATTGTGAGAAGCAAAAGGACATAGTGTTCAAAATATATGTCTTGCTTGAAAAGCTCCATCTCTCTGTAACTAGTAGCAGCGTATTACCATTTGGGACTTGTACACTTATAATCAACATTATTGCTCAGATGGATGACGGATACAGCATGACCATGGATGAGCTAGTGAAAAAACTGAGAGAATATCTGTTGGAGGTGTATGACATGCAATAG 1044 0.4473 MNYTEAQGSVNRSSLQAKMEDSLENWVSHLDDAFNETHDSFDEQEFLREILEEPEREREHPSTVQGGGAATSPTNSTVSFDETSFCGRVTTLHKSNSSNSIMSLKRSCASPAMYLLSFDNPTAGPTTHEPSPKPDPALGSSNKRTAAVKDGSELEPWMPQPRKKVKRPSEIQHHIIAERKRRQELTGSIIALSATIPGLKKMDKAYVLREAVNYTRQLQERVKELENQNKDKRIVSATFIRKSQASSNKITSNCETNTESLFEVEARVLEEEVLIGIHCEKQKDIVFKIYVLLEKLHLSVTSSSVLPFGTCTLIINIIAQMDDGYSMTMDELVKKLREYLLEVYDMQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0597 347 Gene3D - 162 233 IPR036638 GO:0046983
Ssu3g0597 347 MobiDBLite consensus disorder prediction 53 77 - -
Ssu3g0597 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 232 IPR036638 GO:0046983
Ssu3g0597 347 MobiDBLite consensus disorder prediction 119 169 - -
Ssu3g0597 347 Pfam Helix-loop-helix DNA-binding domain 172 219 IPR011598 GO:0046983
Ssu3g0597 347 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 22 346 - -
Ssu3g0597 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Ssu3g0597 347 PANTHER BHLH TRANSCRIPTION FACTOR 22 346 - -
Ssu3g0597 347 SMART finulus 175 224 IPR011598 GO:0046983
Ssu3g0597 347 Coils Coil 208 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0597 Ssu-Chr3 14823307 14826910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0597 115 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.259 1.47e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g0597 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0597 - - aprc:113863851 392.504