Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0596 ATGGAGGATTCATGGGAGGACTTGGTTTCTCATTGGGAAATGGGTGATGATGATTTCTTCATTCAAAGCCACACGAGCTCTTCGAATGAAGAAGAGTCCCTGAGGAACACTATTGTTCAGCAACCAGTTTTCTATCCTGAAAGTGACAGCCCCTCTCCTAATATTCCCTCTTCTTCCTACCTTCAAAGCAACTTCGGTGCTGCCTTTGCCGAGACAAACTTGAAACCACACTTTTCATTTCCATCGGGCTACGTTTTGTCTTTTGTTAACTCTGTTGTTGAACCAGTTTCTACAAGCATGGAGCGAAGCCGTTGCATTGAACCAATGGCGCACCCACAAACAAAGCCACGAGTTCACATATTGGCtgagagaaaaaggagagaggAATTGACTCAGAGCATCGTAGCACTTTCAGCCACCATTCCAGGGTTAAAGAAGaCAGACAAGGCCAATGTACTGCGTGAAGCTGTCAAATATGTGAAACAACTTCAAGAACGTGTGAAAGAGCTagaaaatcaaaagagaaaggAATGTGTGGATTCGGTAATACTCATGAAGAAAACGTTACTCTGCACAAATGATCAAGCCACTCATAGATGTGTGGAAGAACTCCCTGAGGTGAAAGTAACTGTTTTAGATAAGGAAGTGCTCATTGGAATCCATtgtgagaaagaaaagaaaagtttgcTCAAAATATTGTCCTTGCTTAATGATCTCCATCTTTCTCTAACCAGTACCAGCGCATTGCCATTTGGAACTACCACTCTTAAAATTACCATTATTGCTCAGGTACagaacatttaa 804 0.3881 MEDSWEDLVSHWEMGDDDFFIQSHTSSSNEEESLRNTIVQQPVFYPESDSPSPNIPSSSYLQSNFGAAFAETNLKPHFSFPSGYVLSFVNSVVEPVSTSMERSRCIEPMAHPQTKPRVHILAERKRREELTQSIVALSATIPGLKKTDKANVLREAVKYVKQLQERVKELENQKRKECVDSVILMKKTLLCTNDQATHRCVEELPEVKVTVLDKEVLIGIHCEKEKKSLLKILSLLNDLHLSLTSTSALPFGTTTLKITIIAQVQNI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0596 267 PANTHER BHLH TRANSCRIPTION FACTOR 1 265 - -
Ssu3g0596 267 Coils Coil 153 180 - -
Ssu3g0596 267 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 265 - -
Ssu3g0596 267 Pfam Helix-loop-helix DNA-binding domain 118 164 IPR011598 GO:0046983
Ssu3g0596 267 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983
Ssu3g0596 267 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 115 176 IPR036638 GO:0046983
Ssu3g0596 267 SMART finulus 120 169 IPR011598 GO:0046983
Ssu3g0596 267 Gene3D - 113 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0596 Ssu-Chr3 14817426 14819491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0596 84 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.000 1.43e-41 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g0596 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0596 - - gmx:100807144 280.411