Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0590 ATGGAATCGCCGGAGCTCCGGCCGCTTCCGCCGCTCGCACGACAGGCTTCGgtgccgccgccgccgccgccgcctcCTCCTCCGAGAGACGAGGCAGGGTTCACCACCGCGGAGGAGGAGGACGACGACGACGGCGACGAGGAGTTTTACTCGCCGAGAGGCTCGTCGTTGGGAGGCTCCGGCGGCACCGGATCGGGTTCCCGGCGAGTGTTCGCCGCCGGGAGAAGCGTGACCTCTAGCCcgttctcttcctcttcctccggCTCGCCGGAAAGGTCTCACTCCGTCAGCATCTCGCCGCCGGCAAGTTCGGGTCCCCGGAAAACACAGCCAAAGTCACCGGAAATTTACAACCAGCAACACGCGccatcttcttcttctacttCGTTGAGCTCAACACCAGATAGGGTTTTCGCTGAACATGATAACGATGCATTGAGTGCATGTGCACATGCACATGCGTCATCATCGCGTGAAGGAacgttgaagaaaaatgaaaatgcaccATCAGCATCACCACCACCGAGACTGTCTAATGCTTCTTCGTCTTCGGCCTTTTCTCTTCCCTCGTCGCCGGAGAAGGTGACACGTCATCACACTTTCGATCAGTCTCCAAGAATTTCGAGTGTCTCCGACGGACTAATGTTACCGGGTTTGTCATCGTTACCTCTGTCACCCGCCCTGCTTTCATCACCGGAAACCGAAAGAGGAATGTCAAGTCAATTGGGAACAGGTTCTTATGGTGCGGCTGCGCCGCAGAGGAAACACTGGAACATTCCGGTGCTGTCAATGGCAACGCCCTTTGATGAAATTGGAACGGTTCCAGCTCCTCCACCTGTGCCACAGAGGAAGCACTGGGAGATTCCCGGCCCTGCTCCGCCGCCACCGCCGCCGTTGCCGCAGCAAAGGAAGCAGTGGGGAGTGCCGGCGCCGGGGCCGGCGTCGTCAACACCGGGTGGTCAACCGGTGTCGAGGCCGCCGGAATTGGTGCCTCCTTCGAGGCCTTTTGTGTTGCAAAACCAAGGAAACAATGTTTCCCCTGTTGAGTTGCCGGCGAGTTTGGGTGAAATTGAAGAGACTTGTAAACCAAAATTGAAGCCCCTGCATTGGGACAAAGTGAGAACAAGCTCTGATCGTGAAATGGTGTGGGATCAGATGAAGTCAAGTTCATTTAAATTGAATGAGAAAATGATTGAAACATTGTTTGTAGTGAACACACCAAACCCAAAACCCAAGGATGCAACTACAAACTCAGTTTTTCACCCGCCAAATCAGGAGGAAAGAGTACTTGATCCTAAAAAGtctcaaaatatttcaatctTGCTGAAAGCGCTTAATGTCACTATAGAAGAAGTGTGTGAAGCACTCTTAGAAGGTAGTACTGATACACTTGGAGCAGAATTACTTGAAAGCTTATTAAGAATGGCACCAAGCAAGGAAGAAGAACGTAAGTTGAGGGAACATAAAGATGACTCACCAACCAAGCTTGGTCTGGCTGAGAAATTTTTGAAGGCATGTGCTTGA 1524 0.4921 MESPELRPLPPLARQASVPPPPPPPPPPRDEAGFTTAEEEDDDDGDEEFYSPRGSSLGGSGGTGSGSRRVFAAGRSVTSSPFSSSSSGSPERSHSVSISPPASSGPRKTQPKSPEIYNQQHAPSSSSTSLSSTPDRVFAEHDNDALSACAHAHASSSREGTLKKNENAPSASPPPRLSNASSSSAFSLPSSPEKVTRHHTFDQSPRISSVSDGLMLPGLSSLPLSPALLSSPETERGMSSQLGTGSYGAAAPQRKHWNIPVLSMATPFDEIGTVPAPPPVPQRKHWEIPGPAPPPPPPLPQQRKQWGVPAPGPASSTPGGQPVSRPPELVPPSRPFVLQNQGNNVSPVELPASLGEIEETCKPKLKPLHWDKVRTSSDREMVWDQMKSSSFKLNEKMIETLFVVNTPNPKPKDATTNSVFHPPNQEERVLDPKKSQNISILLKALNVTIEEVCEALLEGSTDTLGAELLESLLRMAPSKEEERKLREHKDDSPTKLGLAEKFLKACA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0590 507 MobiDBLite consensus disorder prediction 224 247 - -
Ssu3g0590 507 Gene3D Formin, FH2 domain 357 507 IPR042201 -
Ssu3g0590 507 SUPERFAMILY Formin homology 2 domain (FH2 domain) 368 506 - -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 272 304 - -
Ssu3g0590 507 ProSiteProfiles Formin homology-2 (FH2) domain profile. 355 507 IPR015425 -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 406 425 - -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 72 136 - -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 13 31 - -
Ssu3g0590 507 PANTHER FORMIN-LIKE PROTEIN 1 1 505 - -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 409 423 - -
Ssu3g0590 507 Pfam Formin Homology 2 Domain 360 506 IPR015425 -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 161 194 - -
Ssu3g0590 507 MobiDBLite consensus disorder prediction 1 251 - -
Ssu3g0590 507 PANTHER FORMIN-RELATED 1 505 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu3g0590 507 MobiDBLite consensus disorder prediction 269 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0590 Ssu-Chr3 14711465 14714003 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0590 317 505 FH2 protein (formin) Gene Family AT3G25500 65.306 5.91e-71 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0590 - - vun:114185313 666.766