Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0589 ATGCTTTACATAGCCAATTTTGAGTCTGAAGTGGAGTATCTTAGGACATCCTTTCAAACACTAGAGGCTGCCTGCGAAGAGCTGCGACATTGTAGATTGTTCTTGAAGCTTCTGGAGGCTGTACTTAAAACCGGGAACCGCATGAATGTGGGGACCAACCGTGGGGATGCTGAGGCTTTCAAACTTGATACTCTTCTCAAGCTGGCTGATGTCAAAGGCGCAGATGGAAAAACCACTCTActgcattttgttgtacaagaaattattagaaCTGAAGGTGCTCGTCTCTCCGACACTAATCAAACTCCAAGCTCTACATTGACTGAAGATGCCAAGTGTAGGAGGCTTGGCCTCCAAGTTGTATCAAGCCTGAGTTCCGAGCTAGCAAATGTGAAGAAGGCTGCTGCTATGGATTCTGAAGTTCTCAGCAGTGATGTCTTAAAACTTACCAAAGGAATTGCAAACATAGCAGAGGTTGTGCAATTAATCCAAACGACGGGATCAGCAGATGAAAGCAGCCAGAAGTTTACAGAATCAATGAACAAATTCATCAGAATGGCTGAGGAGGAAATTCCAAAAATTCAAGCCCAAGAAAGTGTTGCTTCCTCCCTTGTGAAGGAGATTACAGAGTATTTTCATGGGAACTTGGCAAAGGAAGAAGCTCATCCATTTAGAGTCTTCATGGTTGTAAGAGACTTTCTAGCAGTTCTTGACCGGGTCTGCAAAGAAGTTGGAATGATAAATGAGAGAACCATGGTTAGTTCAGCCCATAAATTCCCTGTGCCAGTTAATCCAATGCTTCCACAACCCCTTCCTGGATTACATGGGAGGCAAGAGTATAATAACTCTTCAGATGATGACAGTTCATCACCTTAG 876 0.4258 MLYIANFESEVEYLRTSFQTLEAACEELRHCRLFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARLSDTNQTPSSTLTEDAKCRRLGLQVVSSLSSELANVKKAAAMDSEVLSSDVLKLTKGIANIAEVVQLIQTTGSADESSQKFTESMNKFIRMAEEEIPKIQAQESVASSLVKEITEYFHGNLAKEEAHPFRVFMVVRDFLAVLDRVCKEVGMINERTMVSSAHKFPVPVNPMLPQPLPGLHGRQEYNNSSDDDSSSP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0589 291 PANTHER FORMIN-LIKE PROTEIN 1 1 291 - -
Ssu3g0589 291 Pfam Formin Homology 2 Domain 1 237 IPR015425 -
Ssu3g0589 291 SMART it6_source 1 252 IPR015425 -
Ssu3g0589 291 Gene3D Formin, FH2 domain 1 258 IPR042201 -
Ssu3g0589 291 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1 263 IPR015425 -
Ssu3g0589 291 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1 249 - -
Ssu3g0589 291 MobiDBLite consensus disorder prediction 276 291 - -
Ssu3g0589 291 PANTHER FORMIN-RELATED 1 291 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Ssu3g0589 291 MobiDBLite consensus disorder prediction 264 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0589 Ssu-Chr3 14710041 14711433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0589 1 279 FH2 protein (formin) Gene Family AT3G25500 78.136 7.60e-151 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0589 - - gmx:100801837 508.064