Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0587 ATGGCCGGCATAGACTTGGGTTCAGCATCACATTTTGTTCATCATCGCCTTCAACGCCCTGACCTTGAAGACGATGAGAACCAACAAGACCAAGACAACAACGTTAACACTCACGAAGGGCTTGACCTAGTTACACAAAATCAAGGTCCTGGTGATGTTGTTGCTCGCAGGCCAAGAGGAAGACCCCCAGGTTCAAAGAACAAGCCTAAACCACCAGTTATCATCACAAGAGAGAGTGCAAACACGCTTAGGGCTCACATCCTTGAAGTTAGTAGTGGCTGTGATGTGTTTGACTCGGTGGCTACCTATGCAAGGAAGCGTCAAAGAGGGATCTGTGTCCTTAGTGGGAGTGGCACCGTGACCAACGTGACGTTACGGCAGCCGGCAGCCGCCGGCTCTGTCGTCACGCTGCACGGAAGGTTTGAAATCCTGTCCTTGTCAGGATCGTTCCTCCCACCCCCAGCTCCACCAGGTGCGACAAGTTTAACTGTGTTCCTTGGTGGAGGGCAGGGTCAGGTGGTGGGAGGGAATGTTGTTGGTCCTTTGGTGGCTTCTGGGCCTGTTATTGTTATTGCTTCATCTTTTACTAACGTAGCATATGAGAGATTGCCCTTGGATGAAGATGAATCTATGCAGATGCAACAAGGGCAATCATCTggcggtggcagtggtggtagtggtggtggagtTGGTAATAACTCTTTTTCGGACCCGTCTTCGGGGCTTCCGTTCTTCAATTTGCCCCTAAACATGCCTCAGTTACCTGTTGATGGTTGGGCTGGGAACTCTGGTGGAAGGCAATCTTACTGA 810 0.484 MAGIDLGSASHFVHHRLQRPDLEDDENQQDQDNNVNTHEGLDLVTQNQGPGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGSVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVVGPLVASGPVIVIASSFTNVAYERLPLDEDESMQMQQGQSSGGGSGGSGGGVGNNSFSDPSSGLPFFNLPLNMPQLPVDGWAGNSGGRQSY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0587 269 MobiDBLite consensus disorder prediction 210 239 - -
Ssu3g0587 269 CDD DUF296 84 159 IPR005175 -
Ssu3g0587 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 4 269 - -
Ssu3g0587 269 PIRSF ESCAROLA 3 265 IPR014476 GO:0003680
Ssu3g0587 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 197 IPR005175 -
Ssu3g0587 269 MobiDBLite consensus disorder prediction 18 73 - -
Ssu3g0587 269 Gene3D - 83 217 - -
Ssu3g0587 269 ProSiteProfiles PPC domain profile profile. 80 217 IPR005175 -
Ssu3g0587 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
Ssu3g0587 269 MobiDBLite consensus disorder prediction 209 239 - -
Ssu3g0587 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 4 269 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0587 Ssu-Chr3 14660405 14661214 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0587 1 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.356 8.38e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0587 - - gmx:100814613 420.239