Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0578 ATGGCCTCCCCCTCTTCCCCCACCGACTCCAACCCTCCCTCCGCCGTGCCGCTCCCTCTCGCGGCGCCGCCCGCCTCCTCCTCGCGGCGCCTCCCGCCGCCGTGCTGGACCCCGGAGGAAACCGCGGCCCTCATCGACGCCTACCGCGAGAAATGGTACTCCCTCGGCCGCACCAACCTCAAGGCCACCCACTGGCAGGAGGTCGCCGACGCCATCGCCGCGCGCTGCCCCAACGCCTCCCCCGCGGCGAAAACCGCCGTCCAGTGCCGCCACAAAATGGAAAAACTCCGCAAACGCTACCGCACCGAAGTCCAGCGCCTCCGCTCCCTCCCCCTCCCCCGCTTCAACCCCAACACCGCCTCCCCCTCCTCGTGGGTCCACTTCAAATCCATGGACTCCATGGAAAAAGGCCCCTCCAAACCCCACCCCgacaacaccaacaacaacaacaacaacctcaACTTTCTAGACATCAACGACAATGATCACGACGACGAAGACGAGGACGATCTCTACGAGGAATTCAAGAACGCCCCGGGATCCAACACGAGAAGCCTCAACAAGCTCTACAAAAACGGCCCCATCTCCGGGCCGGGCTTCCGGATTCGGATCCCGGCCGGGGCGGGCGCGGCGCAGCACTCGTCGTCGAGGTTCTTTAACGGCCCCCCTGGGATGATGCCGCGCGGCGCGGGCAACGGGGCGAGGTCTGTGAAGAGGGAGCGCGAGAGGGACGCGGTGGCGGAGATGGTGGAGGCCGTAAAGATGCTGCGGGACGGGTTCGTGAGGACGGAGCAGATGAAGATGGAGATGGCGAGGGAGATCGAGAGCATGCGCATGGAGATGGAGATGAAGCGCACCGAGATGATCCTGGACTCGCAGCAGAGGATCGTCGAGGCCTTCGCCAGGGCCGTGTCGCACAAGAGGAGCAAGGGAAAATCCACGCCCTCGCCCTCGCAACCCTAG 963 0.6366 MASPSSPTDSNPPSAVPLPLAAPPASSSRRLPPPCWTPEETAALIDAYREKWYSLGRTNLKATHWQEVADAIAARCPNASPAAKTAVQCRHKMEKLRKRYRTEVQRLRSLPLPRFNPNTASPSSWVHFKSMDSMEKGPSKPHPDNTNNNNNNLNFLDINDNDHDDEDEDDLYEEFKNAPGSNTRSLNKLYKNGPISGPGFRIRIPAGAGAAQHSSSRFFNGPPGMMPRGAGNGARSVKRERERDAVAEMVEAVKMLRDGFVRTEQMKMEMAREIESMRMEMEMKRTEMILDSQQRIVEAFARAVSHKRSKGKSTPSPSQP 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0578 320 ProSiteProfiles Myb-like domain profile. 36 97 IPR001005 -
Ssu3g0578 320 Coils Coil 267 287 - -
Ssu3g0578 320 SMART 118neu2 43 139 IPR006578 -
Ssu3g0578 320 MobiDBLite consensus disorder prediction 140 157 - -
Ssu3g0578 320 MobiDBLite consensus disorder prediction 10 31 - -
Ssu3g0578 320 PANTHER TRANSCRIPTION FACTOR 4 316 - -
Ssu3g0578 320 MobiDBLite consensus disorder prediction 218 238 - -
Ssu3g0578 320 Pfam Myb/SANT-like DNA-binding domain 34 134 IPR044822 -
Ssu3g0578 320 Coils Coil 90 110 - -
Ssu3g0578 320 Gene3D - 36 102 - -
Ssu3g0578 320 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 4 316 IPR044823 -
Ssu3g0578 320 MobiDBLite consensus disorder prediction 1 34 - -
Ssu3g0578 320 MobiDBLite consensus disorder prediction 131 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0578 Ssu-Chr3 14402739 14403701 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0578 35 134 Trihelix Transcription Factor Family AT3G14180 34.000 1.04e-15 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu3g0578 Myb_DNA-bind_4 2.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0578 - - gmx:100807518 411.764