Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0575 ATGCCTCCGAGAATAGTGAAGAGAGGTGCTGCGGCGAAGAGGGCATCGAGGGGATCCTCAAAGGCTGCACCTGAGAACCAACATGAACCTGAGGAAGTGGTtgtgaaaaacaatgaagaaaattCAGTTGTTGATGTTGGTGTGGAAGAGAAGCCCGTTGATGTGAAACAAGAACATGAGGAAGTGCCAAATGGGTCGGCTAAGGTGGAAAACAATGAAGAGGAGGTTAAGGAGTCTATAGATGAATATGAAAAAGATGAACACTTAGATTTGGAGGATAATTATCCTGAGTATGAACCGGAGGAGTATGGTGGTGTTGACTATGATGAGAAGGAAATTGAACAAGATGAAGGTCAGGAGGAGGGAGATGAAGTAGACGAAGATCCTGAAGAGTATGTAGTTGAAGAAGAGGGTGATACAGGTGATGAAGTCGAATATGTTTATGAAGAAGttgaggatgatgatgatgagcaTGCTGGTGTGGAGCATGAGCATGATGAGCATGCACAGATGCCTAATGTGGAGGAAGAGGAACACCGTGAAGTTGTAAAGGAGAGGCAAAAGCGGAAGGAATTTGAAGTATTTGTTGGGGGCCTAGATAAGGATGCCACTGAGCATGATCTGAGGAAGGTTTTCAGTAAAGTTGGGGTAGTTACTGAAGTCAGGCTGATGATAAATCCCCAGACTAAAAGGAACAAGGGATTTGCATTCTTGCGTTTTGAAACTGTTGAGCAAGCAAAAAGAGCTGTGACAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTACATAGGTAACATATGCAAGACTTGGAAAAAGGAAGCTGTAAGTTTTTATCTTGGTCTATTTCTTGCTAGCTTTAAGGCCTGA 906 0.4139 MPPRIVKRGAAAKRASRGSSKAAPENQHEPEEVVVKNNEENSVVDVGVEEKPVDVKQEHEEVPNGSAKVENNEEEVKESIDEYEKDEHLDLEDNYPEYEPEEYGGVDYDEKEIEQDEGQEEGDEVDEDPEEYVVEEEGDTGDEVEYVYEEVEDDDDEHAGVEHEHDEHAQMPNVEEEEHREVVKERQKRKEFEVFVGGLDKDATEHDLRKVFSKVGVVTEVRLMINPQTKRNKGFAFLRFETVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLYIGNICKTWKKEAVSFYLGLFLASFKA 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0575 301 PANTHER RNA RECOGNITION MOTIF 1 288 - -
Ssu3g0575 301 Coils Coil 66 89 - -
Ssu3g0575 301 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 288 - -
Ssu3g0575 301 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 270 IPR000504 GO:0003723
Ssu3g0575 301 Gene3D - 133 266 IPR012677 -
Ssu3g0575 301 SMART rrm1_1 193 266 IPR000504 GO:0003723
Ssu3g0575 301 MobiDBLite consensus disorder prediction 1 140 - -
Ssu3g0575 301 MobiDBLite consensus disorder prediction 93 140 - -
Ssu3g0575 301 SUPERFAMILY RNA-binding domain, RBD 193 287 IPR035979 GO:0003676
Ssu3g0575 301 MobiDBLite consensus disorder prediction 24 75 - -
Ssu3g0575 301 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0575 Ssu-Chr3 14382176 14383950 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0575 193 279 Eukaryotic Initiation Factors Gene Family AT1G49760 31.111 1.62e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0575 - - gmx:100811387 356.295