Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0563 ATGGAAGGAGAGAGAGGCGGTGCTCCCAATTATGAGCTTCAAGTTTCATTCACCAACACCCCACAAGCCATACACGAAATGGGTTTTGTTCAATATGAAGAAAACCAGGTCCTTGGCTTCTTGTCACCCTCTTCACAATCTCAATCTTCTCACCTCTCTCAATCCTTAGACGGTGACACCATcgtcgccgccaccaccacaaccgCCGCAACCATCGGATTCATGAGTCATAACGAACTTGTCACCAAAACTTGGAATAACGACCAGGTAGGAACTCTGGATCCAAAGGCTGTTGATGAAGAAAATTGCACTGGAAATGCTAGTGAAGGCAACAATAACGCTTGGTGGAGGAGCTCAGCTACAGAGAAGGGCAAGGTGAAAATAAGGAGGAAGCTTAGAGAACCAAGGTTTTGTTTCCAAACAAGAAGTGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATATGGCCAGAAAGTTGTCAAGAATAGCCTTCATCCAAGAAGTTATTACCGCTGCACCCACAACAACTGTAGGGTGAAGAAGAGGGTTGAACGACTGTCAGAGGATTGTCGTATGGTGATAACCACCTATGAAGGTAGACACAATCACTCTCCTTGCGACGATTCAAATTTATCCGAGCATGAATGCTTTACCTCTTTCTAG 669 0.426 MEGERGGAPNYELQVSFTNTPQAIHEMGFVQYEENQVLGFLSPSSQSQSSHLSQSLDGDTIVAATTTTAATIGFMSHNELVTKTWNNDQVGTLDPKAVDEENCTGNASEGNNNAWWRSSATEKGKVKIRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVKKRVERLSEDCRMVITTYEGRHNHSPCDDSNLSEHECFTSF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0563 222 Pfam WRKY DNA -binding domain 149 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0563 222 SMART WRKY_cls 148 207 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0563 222 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 14 220 IPR044810 GO:0003700
Ssu3g0563 222 Gene3D WRKY domain 134 208 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0563 222 SUPERFAMILY WRKY DNA-binding domain 140 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0563 222 ProSiteProfiles WRKY domain profile. 143 205 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0563 222 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 14 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0563 Ssu-Chr3 14258077 14266777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0563 3 222 WRKY Transcription Factor Family AT2G44745 57.709 1.84e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0563 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0563 - - gmx:100170677 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0563 3 14258077 14266777 Ssu3g0563 3 14258077 14266777 ECH
Ssu2g0808 2 41906166 41914364 Ssu3g0563 3 14258077 14266777 PCT