Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0560 ATGGATCGCTCCATTTTTTACTTTCACCGTCTTGTTtcatcttttcttattttcactttgtttctGAATGCCGTCCATGCCAGCAAAAGTGCTACATTGTATACTTGGGAGCACATTCTCACGGTCCTATGCCTTCATCTGTTGACCTTGAAACTGCCACACATTCTCATTATGATTTACTGGGTTCAATCTTGGGAAGCCATGAAAAGGCCAAAGAagcaattatttattcatataataaacaCAGTCAATGGCTTTGCAGCTGCTCTTGAAGAGGAAGAAGTAGCAGATATTGCAAAAAACCCAAACGTAGTATCTGTGTTCTTAAGCAAAGAGCATAAACTGCACACTACTCGTTCATGGGAGTTTCTTGGACTGCAAAGAAATGGTATGAACTCAGCATGGCAAAAGGGAAGATTTGGTGAAAATACAATCATCGGTAACATTGACACAGGTGTTTGGCCTGAATCCAAGAGTTTTACTGACAAGGGAATAGGTCCTGTCCCCGCAAAATGGCGTGGTGGCAATGTCTGTCAAATTAACAAACTCCGGGGTACAAAGAAAGTTCCATGTAACAGTCGACTTTGTAAGGCTGGGACCCTTGATCCTAGAAAAGTAAACGGCAAAATAGTGTCATGCCTTcgagaaggaaaaataaaatcagttgCGGAGGGTCAGGAAGCTCTATCTGCAGGCGCCACGGGAATGATTTTGGGCAATCAAAAGCAAAATGGGAACACACTTCTTGCTGAGCCTCATGTTTTGTCCACTGTGAACTATCCTCAAAGCCATAAAAGAACAACGCCTGGTCGTTTTGACATAACTGCCACaGACCCTACAATAAACTCGAATACGACAATAAGGATGTCTACAGCAAGAACATTGCTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCGTTCTCCTCAAGGGGACCCAATAAGATTCAGCCATCAATACTCAAGCCTGATGTAACTGCGCCTGGTGTGAACATACTTGCTGCCTATTCACTGTTCGCTAGTGCATCTAACCTGCCATCAGACCCGCGCCGAGGGTTTCCATTCAATGTATTGCAAGGAACTTCTATGTCTTGCCCTCATGTTGCTGGCATTGCCGGACTTCTCAAAACACTTCATCCTGATTGGAGTCCAGCAGCTATTAAATCAGCAATCATGACCACTGCCAGAATTATAAAATCTTACaaaatgatgatgaagaagaagctTGCTTTATTCCTTAGTTTTACACTTCTCATGAAGAAGAAGCTTGCTTTATTGttgaaaatgatgatgatgaagaagaagctaGCTTGCTTTATTCCTTAG 1323 0.3953 MDRSIFYFHRLVSSFLIFTLFLNAVHASKSATLYTWEHILTVLCLHLLTLKLPHILIMIYWVQSWEAMKRPKKQLFIHIINTVNGFAAALEEEEVADIAKNPNVVSVFLSKEHKLHTTRSWEFLGLQRNGMNSAWQKGRFGENTIIGNIDTGVWPESKSFTDKGIGPVPAKWRGGNVCQINKLRGTKKVPCNSRLCKAGTLDPRKVNGKIVSCLREGKIKSVAEGQEALSAGATGMILGNQKQNGNTLLAEPHVLSTVNYPQSHKRTTPGRFDITATDPTINSNTTIRMSTARTLLGRKPAPVMASFSSRGPNKIQPSILKPDVTAPGVNILAAYSLFASASNLPSDPRRGFPFNVLQGTSMSCPHVAGIAGLLKTLHPDWSPAAIKSAIMTTARIIKSYKMMMKKKLALFLSFTLLMKKKLALLLKMMMMKKKLACFIP 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0560 440 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 54 116 IPR037045 -
Ssu3g0560 440 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 195 401 - -
Ssu3g0560 440 Gene3D Peptidase S8/S53 domain 297 399 IPR036852 GO:0004252|GO:0006508
Ssu3g0560 440 SUPERFAMILY Subtilisin-like 119 402 IPR036852 GO:0004252|GO:0006508
Ssu3g0560 440 Pfam Peptidase inhibitor I9 82 116 IPR010259 -
Ssu3g0560 440 Pfam Subtilase family 255 394 IPR000209 GO:0006508|GO:0008236
Ssu3g0560 440 Gene3D - 186 296 - -
Ssu3g0560 440 PRINTS Subtilisin serine protease family (S8) signature 141 160 IPR015500 -
Ssu3g0560 440 PRINTS Subtilisin serine protease family (S8) signature 358 374 IPR015500 -
Ssu3g0560 440 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 195 401 IPR045051 -
Ssu3g0560 440 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 78 195 IPR045051 -
Ssu3g0560 440 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 78 195 - -
Ssu3g0560 440 ProSitePatterns Serine proteases, subtilase family, serine active site. 359 369 IPR023828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0560 Ssu-Chr3 14153174 14162259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0560 192 399 Subtilisin-like Serine Gene Family AT2G04160 50.962 2.28e-53 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0560 - - gmx:100803751 350.517