Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0552 ATGGTTTCTTTGGCTTCTGCTGCCAGCACATTTACCGTTCGTGTTCAAGCTGCAGCTGATAACAGTGAAGCAAACGCACTGTTAAAGTGGAAAGACAGCCTTGACAAGCCCAGCCAAGATCTCTTGTCAACATGGAGAGGTGCTAGTCCATGCAAATGGGAAGGAATTCAGTGTCACAAATCCAAGTTTGTCTCCAGCATAAATCTTAGAAATTCTAGACTGACAGGTACACTTCACACCCTCAACTTCTCCGCTTTCCCTAACCTCCTCAACCTAGATATCTACAACAACTCCTTTTATGGGACCATTCCCCCACAAGTTGGTAACATGTCCAAAGTAactgttttgaatttttctgcAAATTATTTCCGTGGTTCCATCCCTCAAGAAATGTGGACACTAAGGAGTTTACATGACCTCGATCTTTCCATATGTCAACTGAGTGGAGCGATTCCTAATTCCATAGCAAACTTGTCCAACCTGTCATATCTAGATTTaggtaaaaacaatttttctggCCCCATTCCTCCGGAGATTGGAAAGTTGAACAAGTTGTCGTATCTAAACATTGCGTTTAATAACTTTTTCGGTTCCATTCCGGAAGAAATTGGAATGTTGACAAACCTTAAGATTCTTCTATTGTCAAAAAACTCTCTCTCTGGTACTATCCCTGCAACAATAGGCAACATGAGTAATTTAAATCGACTTCACATTGCCAATAACTCCCTTCTATCTGGGCCAATCCCATCCTCCATATGGAACATGCCTAACTTGACATTGATCCACCTTTATTTCAATAACCTTTCTGGATCAATCCCTGATTCCATAGAAAACTTGGTCAATTTAGAGCAACTTGGACTTGATAACAACCACCTTTCCGGATCCATTCCTTCCACCATTGGAAACTTGACAAAGCTCATCATCTTGTATTTAAGCTTTAACAATCTTTCTGGATCAATTCCTCCCTCTATAGGAAATTTGATCAATTTGGAGACACTTGGTCTCCAAAGAAACAATCTCTCCGGAACAATTCCTGCCACAATTGGAAATCTGAAAAGTCTCACCATTTTAGAATTGTCCGTCAACAAACTCAATGGCAGCATTCCACAAGTCTTCAATAACATGAACTGGCAGTACTTGTTACTGTCTAAGAATGATTTCACAGGCCATTTACCACCTCAAATTTGCTCTGCTGGGTCACTAATGTTCTTTATGGCTCATCTCAACCGTTTCTCGGGTCCAGTGCCAAGAAGCTTAAAGAATTGCTCTAATATTGTTAGAGTCAGGCTAGAGGGAAACCAAATAGAAGGAGATATAGCACAAGATTTTGGTGTTTATCCAAATTTGAAATACATTGATTTGAGCGACAACAAGTTTTACGGCCAAATTTCACCAAACTGGGGGAAGTGCCCTATTCTTGATACCTTGAAGATATCCAACAATAATCTTTCTGGTGGTATACCAATCGAGCTTTTTGAGGCAACTAAGCTAGGGAGGCTTGACCTTTCTTCGAATCACTTGACTGGAAAGCTACCAAAAGAGCTAGGGAAGCTAAAATCAGTAGTTGATCTCAAGATCAACGACAATCATCTTTCAGGAAACGTTCCCACTGAAATAGAACTGTTGCAGAATCTTCAATTCTTGGATCTTGCCAACAATGAGTTGAGTGGCTCAATACCAAAACAAGCTATAACGTTGCCCAACTTAATAGAATTGAATTTgagcaataataaaataaatggaagcATTGCCTCAGAGTTTCGCCAATTTCAGCCTCTTGAATCTCTTGATCTTAGTGGGAATTTGTTGATTGGAACAATACCAAGAGAGCTTGGAGAGTTGAAGCAATTGCAATGGTTGAATCTCTCTTGCAATAATCTTTCTGGTACTATTCCACCCAGTTTTGATGGCATGTCAAGTTTGATTTCGGTCAACATATCATACAACCAGTTAGAAGGGCCACTTCCAAACAATCAAGCCTTTCTTAAGGCTCCAATTgaatcattgaaaaataacaaaggcTTGTGTGGCAACGTCACTGGCTTGATGCTTTGCCCAACCAAACGCATTCAAAAGAGCCACAAGGGCATTCTACTggcattatttattatcttggGCGCTCTTGTACTAGTGTCATGTGGGGTGGGAGTTTCAATGTATATTCTTTGTCAAAAAGCAAGAAAGAAAGAGGCTCATgctaaagaaaaagaacagtCAGAAAAAGCGTTGTCCGAAGAAGTGTTTTCCATATGGAGTCATGATGGAAAAATTATGTTCGAAAATATCATTGAAGCTACCAATAATTTCAATGACAAATATCTCATTGGAATTGGAGGGCAAGGATCTGTCTACAAGGCCGAGTTGCCGTCAGGTCAGGTTTATGCGGTGAAGAAACTTCATTTGGAAACAGATGGAGAGAAGACCAACtttaaagcttttgaaaatgaaattcaagCTTTGACCGAAATCAGGCACCGTAACATTGTAAGGCTCTCTGGATTTTGCTCACATTCACGGCTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGTAGCTTGGATCAAGTGCTAAGCAATGACACAAAAGCAGCTGCATTTGACTGGGAAATGAGGGTGAATGTTCTTAAAGGTGTGGCCAATGCTTTATCCTATATGCATCATGATTGCTCACCTCCAATAATTCATCGTGACATATCCAGCAAGAATGTTCTTTTGGATTCACAATATGAAGCTCACGTCTCTGATTTTGGGACAGCTAAGATTCTAAAGCCTGGTTCACGCGCTTGGACCACATTTGCTGGCACCTTTGGCTATGCAGCTCCAGAGCTTGCCCAGACTATGGAAGTGACTGAGAAATGTGATGTATTCAGTTTTGGAGTGCTTTCTCTAGAAATCATCATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTGTTATCTTCATCTTCAGCAACAGTAACTTATAATTTGCTACTAATTGATGTGTTAGACCAAAGACCACCTCAACCTCTAAATTCAATTGTCGGGGATGTCATTTTGATTGCAAGCTTGGCATTTTCTTGCTTGAGTGAAAATTCAAGTTCTCGCCCAACCATGGATCAAGTGTCAAAAAAGCTTATGATGGGGAAATCACCTTTAGCAGACCAGTTCCCTATAATTAAAGTTGGACAACTGCTCTAA 3180 0.3881 MVSLASAASTFTVRVQAAADNSEANALLKWKDSLDKPSQDLLSTWRGASPCKWEGIQCHKSKFVSSINLRNSRLTGTLHTLNFSAFPNLLNLDIYNNSFYGTIPPQVGNMSKVTVLNFSANYFRGSIPQEMWTLRSLHDLDLSICQLSGAIPNSIANLSNLSYLDLGKNNFSGPIPPEIGKLNKLSYLNIAFNNFFGSIPEEIGMLTNLKILLLSKNSLSGTIPATIGNMSNLNRLHIANNSLLSGPIPSSIWNMPNLTLIHLYFNNLSGSIPDSIENLVNLEQLGLDNNHLSGSIPSTIGNLTKLIILYLSFNNLSGSIPPSIGNLINLETLGLQRNNLSGTIPATIGNLKSLTILELSVNKLNGSIPQVFNNMNWQYLLLSKNDFTGHLPPQICSAGSLMFFMAHLNRFSGPVPRSLKNCSNIVRVRLEGNQIEGDIAQDFGVYPNLKYIDLSDNKFYGQISPNWGKCPILDTLKISNNNLSGGIPIELFEATKLGRLDLSSNHLTGKLPKELGKLKSVVDLKINDNHLSGNVPTEIELLQNLQFLDLANNELSGSIPKQAITLPNLIELNLSNNKINGSIASEFRQFQPLESLDLSGNLLIGTIPRELGELKQLQWLNLSCNNLSGTIPPSFDGMSSLISVNISYNQLEGPLPNNQAFLKAPIESLKNNKGLCGNVTGLMLCPTKRIQKSHKGILLALFIILGALVLVSCGVGVSMYILCQKARKKEAHAKEKEQSEKALSEEVFSIWSHDGKIMFENIIEATNNFNDKYLIGIGGQGSVYKAELPSGQVYAVKKLHLETDGEKTNFKAFENEIQALTEIRHRNIVRLSGFCSHSRLSFLVYKFLEGGSLDQVLSNDTKAAAFDWEMRVNVLKGVANALSYMHHDCSPPIIHRDISSKNVLLDSQYEAHVSDFGTAKILKPGSRAWTTFAGTFGYAAPELAQTMEVTEKCDVFSFGVLSLEIIMGKHPGDLISSLLSSSSATVTYNLLLIDVLDQRPPQPLNSIVGDVILIASLAFSCLSENSSSRPTMDQVSKKLMMGKSPLADQFPIIKVGQLL 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0552 1059 Pfam Leucine rich repeat 447 507 IPR001611 GO:0005515
Ssu3g0552 1059 Pfam Leucine rich repeat 329 387 IPR001611 GO:0005515
Ssu3g0552 1059 Pfam Leucine rich repeat 544 603 IPR001611 GO:0005515
Ssu3g0552 1059 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 157 234 - -
Ssu3g0552 1059 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 234 1058 - -
Ssu3g0552 1059 ProSiteProfiles Protein kinase domain profile. 769 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0552 1059 Pfam Leucine rich repeat N-terminal domain 21 58 IPR013210 -
Ssu3g0552 1059 ProSitePatterns Tyrosine protein kinases specific active-site signature. 893 905 IPR008266 GO:0004672|GO:0006468
Ssu3g0552 1059 PANTHER LRR RECEPTOR-LIKE KINASE 157 234 - -
Ssu3g0552 1059 PANTHER LRR RECEPTOR-LIKE KINASE 16 163 - -
Ssu3g0552 1059 PANTHER LRR RECEPTOR-LIKE KINASE 234 1058 - -
Ssu3g0552 1059 Gene3D Ribonuclease Inhibitor 273 374 IPR032675 -
Ssu3g0552 1059 Gene3D Ribonuclease Inhibitor 176 272 IPR032675 -
Ssu3g0552 1059 SUPERFAMILY Protein kinase-like (PK-like) 755 1039 IPR011009 -
Ssu3g0552 1059 Pfam Protein kinase domain 770 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0552 1059 Coils Coil 726 746 - -
Ssu3g0552 1059 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 16 163 - -
Ssu3g0552 1059 SMART LRR_typ_2 303 327 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 206 230 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 279 302 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 351 374 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 158 182 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 255 278 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 614 637 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 566 589 IPR003591 -
Ssu3g0552 1059 SMART LRR_typ_2 542 563 IPR003591 -
Ssu3g0552 1059 Pfam Leucine Rich Repeat 616 637 IPR001611 GO:0005515
Ssu3g0552 1059 Pfam Leucine Rich Repeat 305 327 IPR001611 GO:0005515
Ssu3g0552 1059 Gene3D Transferase(Phosphotransferase) domain 1 848 1048 - -
Ssu3g0552 1059 Gene3D Ribonuclease Inhibitor 19 175 IPR032675 -
Ssu3g0552 1059 Gene3D Ribonuclease Inhibitor 375 686 IPR032675 -
Ssu3g0552 1059 SUPERFAMILY RNI-like 66 388 - -
Ssu3g0552 1059 SUPERFAMILY RNI-like 333 654 - -
Ssu3g0552 1059 Gene3D Phosphorylase Kinase; domain 1 726 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0552 Ssu-Chr3 13904099 13907559 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0552 17 941 Receptor kinase-like Gene Family AT4G08850 44.787 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu3g0552 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0552 - - gmx:100814634 1632.46