Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0542 ATGGGTCACAATATTTATCGTTGGTTTTTTGTTCTCTGTTTACAGTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACGTTTGTTGACCTCGAAATTGCTACGTATTCTCATTACGATTTACTAGGTTCAATCCTGGGAAGTCAGGAGAAAGCGAAAGAAGCAATTATTTACTCATATAATAGACACATCAATGGCTTTGCTGCCCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAAAAAACCCAAATGTGGTGTCTGTGTTCTTGAGCAAAGAACATAAATTGCACACTACCCGGTCATGGGAATTTCTCGGATTACACAGAAATGGTGAGAACTCTGCATGGCAAAAGGGAAGATTTGGTGAAAATACAATAATTGGTAATATCGACACAGGTGTTTGGCCTGAATCCCAGAGCTTCAATGATAAAGGATTTGGCCCCATCCCGTCAAAATGGCGCGGGGCTAATGTTTGTCAAATAAACAAAGTTCCGGGCTCCAAGAGAAATCCATGCAACAGTGTTGACATGGTTAATACACATGGAGCTGACATGTTTGGAGCTAGTCTTTTTGTAAATTTGCCACCCAATCAGGCCTTTTCTCTGATCCTTGCCACTGATGCTAAACTTGCTAATGCGACATTTCGAGATGCTCAACTTTGTAGGCCTGGAACACTTGACCCTACAAAAGTAAATGGCAAAATAGTGTCATGCATTcgagaaggaaaaataaaatcagttgCCGAGGGTCAGGAAGCTCTATCTGCAGGCGCCCAGGCAATGCTTTTGGgcaatcaaaagaaaaatgggaaaaCAACTCTGGCCGAGCCTCATGTTTTGTCCACTGTGAACAATCCTTCTGAACATGGAAGGACAAAGCCCAGTGGTTTTCACATAACTGCCATGGACGACGAGCCTATAAAATCGGGTGTTACAATAAAATTGTCCCCAGCAAGAACATCATTTGGAAGAAAGCCAGCTCCAGTTATGGCTTCATTCTCATCTAGAGGACCCAATAAGATTCAGCCATCGATACTCAAGCCTGATGTAACTGCGCCTGGTGTGAACATACTTGCCGCCTATTCACAATTCGCAAGTGCATCTAACTTGCTAGCAGACGGTCGTCGTGGGTTTAAATTCAATGTATTGCAAGGAACTTCTATGTCTTGCCCTCATGTCGCGGGCATCGCTGGACTTCTCAGAACACTTCATCCTAATTGGAGTCCAGCAGCTATTAAATCAGCAATCATGACCACAGCAACCACACGTGACAACACAAACAGTCCAATACAGGATGCGTTTGATAAAAAATTGGCTACTCCCTTCGCTTATGGTTCAGGACATGTTCAACCGGACCTTGCGGTAGATCCTGGGCTTGTTTACGATCTAAGCCTCACTGATTACTTGAACTTCTTATGTGCTTCGGGATACGACCAACAACTCATTTCTGCACTCAATTTCAATAGGACATTTATTTGTTCAGGGTCTCACAGCGTAACAGACTTGAACTACCCTTCAATCACATTACCAAATCTTGGCTTAAAAGCCATAACCATTACTCGCACAGTCACAAATGTTGGGCCACCAAGCACGTACACTGCAAATGCCCAATTGCCTGGATATAACATTGCCGTTGTGCCAAATTCCTTGACTTTCAAGAAAATTGGTGAAAAGAAGACATTCCAGGTTACTGTGCAGGCAAGGAGTGTAACTAAGCGGGGAGACTATCAATTCGGGAAATTGCAATGGACGGATGGAAAGCATATAGTAAGGAGTCCTATTACTGTTAGGCGCAAATGA 1812 0.4244 MGHNIYRWFFVLCLQCYIVYLGAHSHGPSPTFVDLEIATYSHYDLLGSILGSQEKAKEAIIYSYNRHINGFAALLEEEEAADIAKNPNVVSVFLSKEHKLHTTRSWEFLGLHRNGENSAWQKGRFGENTIIGNIDTGVWPESQSFNDKGFGPIPSKWRGANVCQINKVPGSKRNPCNSVDMVNTHGADMFGASLFVNLPPNQAFSLILATDAKLANATFRDAQLCRPGTLDPTKVNGKIVSCIREGKIKSVAEGQEALSAGAQAMLLGNQKKNGKTTLAEPHVLSTVNNPSEHGRTKPSGFHITAMDDEPIKSGVTIKLSPARTSFGRKPAPVMASFSSRGPNKIQPSILKPDVTAPGVNILAAYSQFASASNLLADGRRGFKFNVLQGTSMSCPHVAGIAGLLRTLHPNWSPAAIKSAIMTTATTRDNTNSPIQDAFDKKLATPFAYGSGHVQPDLAVDPGLVYDLSLTDYLNFLCASGYDQQLISALNFNRTFICSGSHSVTDLNYPSITLPNLGLKAITITRTVTNVGPPSTYTANAQLPGYNIAVVPNSLTFKKIGEKKTFQVTVQARSVTKRGDYQFGKLQWTDGKHIVRSPITVRRK 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0542 603 Pfam Fibronectin type-III domain 505 600 IPR041469 -
Ssu3g0542 603 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 188 602 IPR045051 -
Ssu3g0542 603 PANTHER SUBTILISIN-LIKE PROTEASE GLYMA18G48580 10 178 - -
Ssu3g0542 603 PRINTS Subtilisin serine protease family (S8) signature 126 145 IPR015500 -
Ssu3g0542 603 PRINTS Subtilisin serine protease family (S8) signature 388 404 IPR015500 -
Ssu3g0542 603 ProSitePatterns Serine proteases, subtilase family, serine active site. 389 399 IPR023828 -
Ssu3g0542 603 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 13 101 IPR037045 -
Ssu3g0542 603 MobiDBLite consensus disorder prediction 285 305 - -
Ssu3g0542 603 ProSiteProfiles Serine proteases, subtilase domain profile. 105 459 - -
Ssu3g0542 603 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 178 IPR045051 -
Ssu3g0542 603 Pfam Peptidase inhibitor I9 17 101 IPR010259 -
Ssu3g0542 603 Gene3D - 476 602 - -
Ssu3g0542 603 Pfam Subtilase family 127 429 IPR000209 GO:0006508|GO:0008236
Ssu3g0542 603 PANTHER SUBTILISIN-LIKE PROTEASE GLYMA18G48580 188 602 - -
Ssu3g0542 603 SUPERFAMILY Subtilisin-like 42 511 IPR036852 GO:0004252|GO:0006508
Ssu3g0542 603 Gene3D Peptidase S8/S53 domain 327 472 IPR036852 GO:0004252|GO:0006508
Ssu3g0542 603 Gene3D - 186 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0542 Ssu-Chr3 13619970 13629676 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0542 180 601 Subtilisin-like Serine Gene Family AT2G04160 48.951 2.84e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0542 - - gmx:100813564 674.47