Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0539 ATGGGTCGCAATATTTATCGTTGGTTTTTTGTTCGCTGTTTACAGTGTTACATTGTATACTTGGGAGCTCATTCTCATGGTCCTAGCCCTACGTTTCTTGACCTCGAAATTGCTACGTATTCTCATTACGATTTGCTAGGTTCAATCCTGGGAAGACACATCAATGGCTTTGCTGCGCTACTTGAGGAGGAAGAAGCAGCAGATATTGCAAAAAACCCAAATGTGGTGTCTGTGTTCTTGAGCAAAGAACATAAATTGCACACTACCCGGTCATGGGAATTTCTCGGATTACACAGAAACGGTAAGAACTCTGCATGGCAAAAGGGAAGATTTGGTGAAAATACAATAATTGGTAATATCGACACAGGTGTTTGGCCTGAATCCCAGAGCTTCAATGATAAAGGATTTGGCCCCATCCCGTCAAAATGGCGCGGGGGGTGGCTTTACGTCTTTGATACAAATAATGAAGCCCAAGTTTTTGGACTATGTTCGTTAATGAAgGGAGCCAGTCTTTTTGTAAGTTTGCCACCCAATCGGGCCTTTTCTCTGATCCTTGCCACTGACGCTAAACTTGCTAATGCGACATTTCGAGATGCGCCTGGAACACTTGATCCTACAAAAGTAAAGGGCAAAATAGTGCGTTGCCTTcgagaaggaaaaataaaatcagttgCGGAGGGTCAGGAAGCTCTGTCTGCAGGCGCCCAGGCAATGCTTATGGGCAATCAAAAGCAAAATGGGAAAACAACTCCTGCTGAGCCTCATGTTTTGTCCACTGTGAACGACGGACGACGTCCCTATAAAATCGGGTGTGACAATAAAATGTCCCCAGCAAGAACATTATATGGAAGAAAACCAGCTCCAGTTATGGCTTCTTTCTCATCTAGAGGACCCAATAAGATTCAGCCATCGATACTCAAGCCTGATGTAACTGCGCCTGGTAAGGACATACTTGCTGCCTATTCACAAAACGCAAGTGCATCTAACTTGCTAACAGACGGTCGTCGTGGGTTTAAATTCAATGTATTGCAAGGAACTTCTATGTCTTGCCCTCATGTCGCGGGCATCGCTGGACTTCTCAAACACTTCATCCTACTTGGAGTCCAGCAGCTATTAAATCAGCAATCATGA 1131 0.4368 MGRNIYRWFFVRCLQCYIVYLGAHSHGPSPTFLDLEIATYSHYDLLGSILGRHINGFAALLEEEEAADIAKNPNVVSVFLSKEHKLHTTRSWEFLGLHRNGKNSAWQKGRFGENTIIGNIDTGVWPESQSFNDKGFGPIPSKWRGGWLYVFDTNNEAQVFGLCSLMKGASLFVSLPPNRAFSLILATDAKLANATFRDAPGTLDPTKVKGKIVRCLREGKIKSVAEGQEALSAGAQAMLMGNQKQNGKTTPAEPHVLSTVNDGRRPYKIGCDNKMSPARTLYGRKPAPVMASFSSRGPNKIQPSILKPDVTAPGKDILAAYSQNASASNLLTDGRRGFKFNVLQGTSMSCPHVAGIAGLLKHFILLGVQQLLNQQS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0539 376 Pfam Subtilase family 113 362 IPR000209 GO:0006508|GO:0008236
Ssu3g0539 376 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 12 87 IPR037045 -
Ssu3g0539 376 ProSitePatterns Serine proteases, subtilase family, serine active site. 345 355 IPR023828 -
Ssu3g0539 376 Gene3D Peptidase S8/S53 domain 283 362 IPR036852 GO:0004252|GO:0006508
Ssu3g0539 376 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 10 152 - -
Ssu3g0539 376 PANTHER TRIPEPTIDYL-PEPTIDASE II-RELATED 167 362 - -
Ssu3g0539 376 Gene3D - 175 282 - -
Ssu3g0539 376 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 10 152 IPR045051 -
Ssu3g0539 376 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 167 362 IPR045051 -
Ssu3g0539 376 SUPERFAMILY Subtilisin-like 50 364 IPR036852 GO:0004252|GO:0006508
Ssu3g0539 376 Pfam Peptidase inhibitor I9 53 87 IPR010259 -
Ssu3g0539 376 PRINTS Subtilisin serine protease family (S8) signature 112 131 IPR015500 -
Ssu3g0539 376 PRINTS Subtilisin serine protease family (S8) signature 344 360 IPR015500 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0539 Ssu-Chr3 13428709 13435365 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0539 166 361 Subtilisin-like Serine Gene Family AT5G59810 45.714 2.46e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0539 - - gmx:100813564 301.597