Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0531 ATGGAGAGGGTTGCAGAACCAAAGGTACTTCCTCGGTCCTTGTCTGTTTTGGTTGAGGTGTCTAATGCACACACTGCTGCAATAAGAGAAGCTGGTCAAAGACTAAATGGGCAGGATGTTTCGAGTGGGCGTGGGATGCCAGCAAGAGAAGGGAATCAGTTTTCGAAATCACTGGATGGCCCTATGACACGTCTGGCCTCCATCAGAGAAGTGGCTCAGTTATCAAATGCGCGAATAGTTTTGGTAAGAGAGGATATGGGATTTGATACACGATGTCAAGAGCCTCCCTCCCCTGCGCCTACAAGAACGTGGAAAGGAAAGGGTTCTTTACCAGAACCTGTAGAACTTGTGGCTGATAGTGAGACATTGAAGGGAAGCAATAATTCTTTTGTGGAAACTGGTCCAAGTTCATTTGCTGGTGCTAGTCATCCCCCAGAACCTGTTGATACTGATCTTATGAGAACGGTTTATGTACCAATAGGTCAAAGCAAATCTGAGTCTGGATGCTTAATGAAGAGCGTGTCCTTGAAGGGTCCTTTCTTAGAAGATCTTACAATTCGTGTTCCCACTAAGAAACCAAGCGTGGCTGTTATTTCTCCTGCAGAAAGCCTGGTTGAAGAATCAAATGACATGGGTAACATATCCTCACCATTTTCAGGTGCTCGTGCATCACAGAATATTGAGAACTCTCCCCTTGCCCCAGATTCTGAGGAGAAAGAATGTGTTTGGGATGCATCTTTGCCTCCAAGTGGCAATGTCAGTCCTCATAGTAGTATTGATAGTACTAGTGTTGTCAGAACAATGAGCATTGCTAATAGTTGTGCAAGTACATACCGGAGTGATGCAATCACTAGTGATGGCATGCTTAGTTTGGACAGGAATTGTGATAGCACTAAAGGAAGTGTAAGAGGGGATTCACTTGAGAGTGCAAAAACTAGTGCCAGTCGAGCAAGTGATAGCAGTGGCCTCAGTGATGACAGCAACTGGAGTAACATTACTGGTAGTGCCAATAAACCCCACAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCCATCCGAGCACGCGATGGGATTTTGGGCATGAGTCATTTTAGGTTACTCAAACGACTTGGTTGTGGTGATATTGGAAGTGTATATCTCTCAGAGCTAAGTGCAACTCGGTGCTTTTTCGCAATGAAAGTTATGGACAAGGCATCCTTAGCAAGCAGAAATAAGCTGACTAGGGCACAGACAGAAAGAGAGATATTGCAGTTGCTGGACCATCCTTTTCTGCCTACTTTGTATACACATTTTGAGACGGATAGATTCTCCTGTTTGGTAATGGAATACTGTCCAGGGGGTGATCTGCACACTTTAAGGCAACGGCAACCTGGGAAACATTTCTCAGAGTATGCTGCACGCTTTTATGCTGCTGAGGTACTCTTGGCACTTGAATATCTTCACATGCTTGGAGTTGTGTATCGAGATCTTAAACCTGAAAATGTATTGGTCCGAGATGATGGTCACATAATGCTTTCAGACTTCGACCTTTCTCTCAGATGTGCTGTTTCACCTATCCTTATTAGAAATTTCGACGGCGACCCCTCAAAACGAGCTGGTGGTGCATTCTGTGTCCAGCCTGCTTGCATTGAGCCTTCATCGGTATGCATCCAGCCTTCATGTTTCATGCCTCGGCTCTTTGCTCAGAAAAATAAGAAGTCACGAAAGCCGAAAGCCGAACCTGGCCTGCCATCCAGCACGCTTCCTGAGCTTGTCGCAGAACCAACAACAGCTCGGTCGATGTCCTTTGTTGGCACTCACGAGTACCTTGCTCCTGAAATAATCAAAGGAGAAGGTCATGGAAGTGCAGTTGATTGGTGGACATTTGGAATTTTCTTGCACGAGCTATTATATGGTAAAACTCCTTTCAAAGGATCGGGAAACCGTGCGACGCTGTTCAACGTAGTAGGACAGCAGCTCAGATTTCCTGAATCCCCGGCCACGAGTTATGCCAGCCGTGATCTGATCCGGGGCTTGCTGGTGAAGGAGCCGCAGCACCGTCTCGGGGTGAAGAGGGGTGCGACCGAGATCAAACAGCACCCCTTCTTTGAAGGCGTGAACTGGGCGTTGATTAGGTGCAGCACACCACCAGAAGTTCCAAGACCAGTTGAGTGTGACCTACCAGCAAAGTTTGAACCAGTTGATACTGTTGGGGTTGGCAACAACAATAGTAGTAAGAGGATGGTGGGTAATAATGACATGAAGTCTGGTGGTAAATATCTGGACTTTGAGTTCTTTTAG 2283 0.4634 MERVAEPKVLPRSLSVLVEVSNAHTAAIREAGQRLNGQDVSSGRGMPAREGNQFSKSLDGPMTRLASIREVAQLSNARIVLVREDMGFDTRCQEPPSPAPTRTWKGKGSLPEPVELVADSETLKGSNNSFVETGPSSFAGASHPPEPVDTDLMRTVYVPIGQSKSESGCLMKSVSLKGPFLEDLTIRVPTKKPSVAVISPAESLVEESNDMGNISSPFSGARASQNIENSPLAPDSEEKECVWDASLPPSGNVSPHSSIDSTSVVRTMSIANSCASTYRSDAITSDGMLSLDRNCDSTKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAIRARDGILGMSHFRLLKRLGCGDIGSVYLSELSATRCFFAMKVMDKASLASRNKLTRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARFYAAEVLLALEYLHMLGVVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPILIRNFDGDPSKRAGGAFCVQPACIEPSSVCIQPSCFMPRLFAQKNKKSRKPKAEPGLPSSTLPELVAEPTTARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLHELLYGKTPFKGSGNRATLFNVVGQQLRFPESPATSYASRDLIRGLLVKEPQHRLGVKRGATEIKQHPFFEGVNWALIRCSTPPEVPRPVECDLPAKFEPVDTVGVGNNNSSKRMVGNNDMKSGGKYLDFEFF 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0531 760 MobiDBLite consensus disorder prediction 297 342 - -
Ssu3g0531 760 MobiDBLite consensus disorder prediction 90 109 - -
Ssu3g0531 760 SMART serkin_6 365 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0531 760 MobiDBLite consensus disorder prediction 219 240 - -
Ssu3g0531 760 Gene3D Transferase(Phosphotransferase) domain 1 449 715 - -
Ssu3g0531 760 SUPERFAMILY Protein kinase-like (PK-like) 347 718 IPR011009 -
Ssu3g0531 760 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 76 760 - -
Ssu3g0531 760 CDD STKc_phototropin_like 363 716 - -
Ssu3g0531 760 ProSiteProfiles Protein kinase domain profile. 365 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0531 760 Pfam Protein kinase domain 594 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0531 760 Pfam Protein kinase domain 366 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0531 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Ssu3g0531 760 MobiDBLite consensus disorder prediction 297 338 - -
Ssu3g0531 760 Gene3D Phosphorylase Kinase; domain 1 365 448 - -
Ssu3g0531 760 MobiDBLite consensus disorder prediction 36 59 - -
Ssu3g0531 760 PANTHER FLIPPASE KINASE 1-RELATED 76 760 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0531 Ssu-Chr3 13109227 13112759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0531 1 760 AGC Kinase Gene Family AT2G44830 66.625 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu3g0531 Pkinase 1.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0531 - - gmx:100800019 1423.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0531 3 13109227 13112759 Ssu3g0531 3 13109227 13112759 ECH
Ssu2g0841 2 43520120 43523989 Ssu3g0531 3 13109227 13112759 PCT