Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0520 ATGTCGCACTCTATTACCCCCTCCCCTCTTTTACTTTTCATACCTCCTTGCCTCTTGTCATCGCCAGCCGCCTCTTCCCTATCCCTACCGTCTCTTGTTACCATGGATCCCTTTAAAGGACAAGGAGGCATTCAGATGCTGCTAACTGCTGAACAAGAAGCCCAACATATTGTTTCTAATGCAAGAAATTTAAGGACCCAAAGGTTGAAGCAGGCAAAGGAAGAGGCTGAGAGGGAGGCAGGACAATACAGATCTCACATGGAAGATGAGTATCAAAAGTCAATTTCAGAGACCACTGGGAGCTCTGGATCTAATGTAAAAAGGCTTGAGGAGGAGACAGAGgctaagattaaaaatttaaagaaatcaacTTCAATGGTCACAACAGAAGTGGTTGACATGCTACTCAAATATGTtacaaatatcaaaacataa 435 0.4046 MSHSITPSPLLLFIPPCLLSSPAASSLSLPSLVTMDPFKGQGGIQMLLTAEQEAQHIVSNARNLRTQRLKQAKEEAEREAGQYRSHMEDEYQKSISETTGSSGSNVKRLEEETEAKIKNLKKSTSMVTTEVVDMLLKYVTNIKT 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0520 144 MobiDBLite consensus disorder prediction 69 93 - -
Ssu3g0520 144 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 42 143 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu3g0520 144 PANTHER V-TYPE PROTON ATPASE SUBUNIT G3 35 144 - -
Ssu3g0520 144 Coils Coil 66 93 - -
Ssu3g0520 144 MobiDBLite consensus disorder prediction 69 110 - -
Ssu3g0520 144 Pfam Vacuolar (H+)-ATPase G subunit 41 143 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu3g0520 144 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 35 144 IPR005124 GO:0016471|GO:0046961|GO:1902600
Ssu3g0520 144 Gene3D - 36 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0520 Ssu-Chr3 12881063 12885712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0520 42 142 Primary Pumps ATPases(2) AT4G23710 52.475 1.28e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0520 K02152 - gmx:100818549 195.667