Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0517 ATGAGAATtggttcctcttcttcttcttcttccggTTGTTCGCGTTTCTGGTCGTCGGCGCTCCGATCGAAGCGCCTCGTGTCACCGGCGGAGAAAGCCGCCCGCGACAGCTCCGACCTCGGCCTCTCCCGCCGTCTCGGCGTCCTCGACCTCGTACTCCTCGGAATCGGCGCCTCCATCGGCGCCGGCATCTTCGTCGTCACCGGCACCGTCGCCCGCGACGCCGGTCCCGGAGTAACAATAAGTTTTATACTTGCGGGAGCATCATGTGTTATAAATGCACTCTGTTACGCAGAACTAGCTTCTCGATTTCCTGCTGTTGTTGGAGGAGCATATCTATATGCATACACAGCTTTTAATGAACTTAcagcttttcttgtttttggaCAATTAATGCTTGACTATCACATTGGAGCAGCTAGTATAGCAAGAAGCCTAGcaaattatctaataaatattctaGAACTCTTCCCAGTTTTCAAAGATAATATTCCAAAATGGATTGGACACGGTGAAAACATTGGAGATGTGCTATCTATCAATGTCTTGGCTCCAATTCTACTAGTTCTTCTCACTTTTATTCTCTGTCGGGGTGTTCAAGAATCGTCTGTTGTGAATTCTCTTATGACAGTGACCAAGGTAGTCATTgttatcattgttatttttgCTGGAGCATTTGAGGTTGACGTTTCCAACTGGTCTCCCTTTGCTCCAAATGGTTTAAAAGCCATATTTACAGGAGCTACCGTAGTCTTCTTTGCATATGTTGGATTTGATGCAGTTGCCAATTCTGCCGAAGAATCTAAGAGGCCTCAGCGGGATTTACCAATAGGCATAATAGGAAGCCTCTTAATATGTATTGCATTGTACATTGGAGTATGCTTGGTGATTACTGGAATGGTTCCGTACAAGTTTCTAGGAGAAGATGCTCCTTTGGCCGAAGCTTTTTCGTCTAAGggattaaaatttgtttctattctGATTAGCATTGGTGCTGTTGCTGGACTTACAACAACACTCCTTGTTGGTCTTTACGTTCAGTCTCGGCTATATCTTGGGCTTGGCAGGGATGGCTTACTACCCTCAATATTTGCTAAAGTCCACTCCAAACGCCACACCCCTATTCATTCTCAGATCTGGGTTGGCCTTGTTGCCAGTGTTTTGGCTGGGCTATTGAATGTGCATGTGCTCTCTCACATTCTTTCCGTTGGTACATTGACTGGCTATTCGGTTGTCTCAGCCTGTGTTGTTGTACTTCGCTGGAAGGATAAAACAAATAGTCAAGTGTCATCGGCTGCTGAGCGGGAAGGTGTAATTTGCCTCATTACTGTTGCTGTTTGTGGATTTGCTACTGGGCTCTTGTACCGTTATGATGCTTCATATATTTTTCTGATTCTGGCTATAGTGCTAGCAGCCGGTGCTTCTGCTGCTCTGGTTTTACGCCAGAACACATTGATGGTTGTATGTGTCAAATACACAAAACGGAAAGGCAATCTCAAGGTTTATGCAGATGCACCAGGGTTTTCTTGCCCCGGGGTTCCCCTTCTGCCAAATATTTGCATCTTTTTTAACATGTTCTTATTTGCCCAGTTACATCATGAAGCATGGGTGAGATTTGTGGTTCTTTCTGTTGTCATGGTTGGTGTTTATGCAATATATGGCCAGTATCATGCTAACCCCAGTGCAGATGAGAATATCTATCACCAGGCACCAGAGGAAGAAGCTCTATGA 1731 0.4315 MRIGSSSSSSSGCSRFWSSALRSKRLVSPAEKAARDSSDLGLSRRLGVLDLVLLGIGASIGAGIFVVTGTVARDAGPGVTISFILAGASCVINALCYAELASRFPAVVGGAYLYAYTAFNELTAFLVFGQLMLDYHIGAASIARSLANYLINILELFPVFKDNIPKWIGHGENIGDVLSINVLAPILLVLLTFILCRGVQESSVVNSLMTVTKVVIVIIVIFAGAFEVDVSNWSPFAPNGLKAIFTGATVVFFAYVGFDAVANSAEESKRPQRDLPIGIIGSLLICIALYIGVCLVITGMVPYKFLGEDAPLAEAFSSKGLKFVSILISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPSIFAKVHSKRHTPIHSQIWVGLVASVLAGLLNVHVLSHILSVGTLTGYSVVSACVVVLRWKDKTNSQVSSAAEREGVICLITVAVCGFATGLLYRYDASYIFLILAIVLAAGASAALVLRQNTLMVVCVKYTKRKGNLKVYADAPGFSCPGVPLLPNICIFFNMFLFAQLHHEAWVRFVVLSVVMVGVYAIYGQYHANPSADENIYHQAPEEEAL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0517 576 Pfam Amino acid permease 46 445 IPR002293 GO:0016020|GO:0022857|GO:0055085
Ssu3g0517 576 Gene3D Amino acid/polyamine transporter I 42 487 - -
Ssu3g0517 576 PIRSF AA_transporter 437 576 - -
Ssu3g0517 576 PIRSF AA_transporter 30 496 - -
Ssu3g0517 576 PANTHER CATIONIC AMINO ACID TRANSPORTER 9, CHLOROPLASTIC 6 572 - -
Ssu3g0517 576 Pfam C-terminus of AA_permease 508 557 IPR029485 -
Ssu3g0517 576 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 6 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0517 Ssu-Chr3 12825608 12830151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0517 8 482 Organic Solute Cotransporters AT1G05940 72.083 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0517 K03294 - gmx:100804988 929.858
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0517 3 12825608 12830151 Ssu3g0517 3 12825608 12830151 ECH
Ssu8g2412 8 62851411 62853042 Ssu3g0517 3 12825608 12830151 PCT