Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0515 ATGGATGATAATGCTGCCGCTGTGGCCGGTGAGAAGACGTCATGCTCACGGGGGAGCGACGACGATGACGGCTGTGGCGGCGACGCCGCTGGGAGGAAGAAGCTGAGGCTGACGAAAGAACAGTCCATGGTGTTGGAAGAAACATTCAAGAAGCATAACACGCTGAATCCGaaacgGAAGCAAGCGCTGGCAGAGGAGTTGAATCTGAAGCCTAGACAAGTGGAGGTGTGGTTTCAGAACAGAAGGGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAATACTTAAAGAGATGCTGTGAGAATTTAACTGAAGAGAATAGAAGGTTGCACAAAGAAGTCCAAGAGCTTAGGGCACTGAAATTATCCCCACAAATGTACATGCATATGAACCCTCCCACCACTCTTACAATGTGCCCTTCTTGTGAGCGTGCTCACTCCATGGCATCCTCCTCCCCTGCCACCGTTCACTCAGCGGCTGCGCCGAGTAATCGCAAACTGTTTGGCGCAAACATCCGGCGGCCGGTGCCCGTCTCCACTTGGCCATTTGAAGGCTCACTTCCTCGGCCATAA 576 0.5191 MDDNAAAVAGEKTSCSRGSDDDDGCGGDAAGRKKLRLTKEQSMVLEETFKKHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLHKEVQELRALKLSPQMYMHMNPPTTLTMCPSCERAHSMASSSPATVHSAAAPSNRKLFGANIRRPVPVSTWPFEGSLPRP 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0515 191 MobiDBLite consensus disorder prediction 15 33 - -
Ssu3g0515 191 Pfam Homeodomain 32 86 IPR001356 GO:0003677
Ssu3g0515 191 SUPERFAMILY Homeodomain-like 23 89 IPR009057 -
Ssu3g0515 191 MobiDBLite consensus disorder prediction 1 33 - -
Ssu3g0515 191 Pfam Homeobox associated leucine zipper 88 122 IPR003106 GO:0006355|GO:0043565
Ssu3g0515 191 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 7 183 - -
Ssu3g0515 191 ProSiteProfiles 'Homeobox' domain profile. 28 88 IPR001356 GO:0003677
Ssu3g0515 191 ProSitePatterns 'Homeobox' domain signature. 63 86 IPR017970 GO:0000981|GO:0006355
Ssu3g0515 191 PANTHER - 7 183 - -
Ssu3g0515 191 SMART halz 88 131 IPR003106 GO:0006355|GO:0043565
Ssu3g0515 191 Gene3D - 26 93 - -
Ssu3g0515 191 CDD homeodomain 32 89 IPR001356 GO:0003677
Ssu3g0515 191 SMART HOX_1 30 92 IPR001356 GO:0003677
Ssu3g0515 191 Coils Coil 101 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0515 Ssu-Chr3 12811286 12813495 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0515 11 145 Homeobox Transcription Factor Family AT3G60390 79.710 5.78e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu3g0515 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0515 K09338 - gmx:100819624 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0515 3 12811286 12813495 Ssu3g0515 3 12811286 12813495 ECH
Ssu2g0857 2 43929249 43931473 Ssu3g0515 3 12811286 12813495 PCT