Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0511 ATGGGGGAACTATGGACACAAATGGGCTCATTAATGGCCACAATCATGTTTGTGTATGCCATGTTTGAGCGTTTTTTCCCGGCTGCACTTCGTGACACTCTTCAAATCCACACTCAGAAAGTGGTGAACCTGTTGTACCCTTATGTCCAAATCACCTTCCCTGAGTTCTCAGGTGAGAGGCTCAAGCGAAGTGAGGCTTACACTGCCATCCAAACCTACCTCAGTGAGAACTCTTCCCAGCTAGCCAAAAGACTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCTCTGGTGCTTAGCATGGACGATGATGAAGAGGTCACTGATGAGTTCCAAGGTGTGAAGCTTTGGTGGGCTGCAAGCAAAACTGCCACTAACGCTCATGCATATTCCTTCTCTTATTACACTCCCCCAGATGGGAAGAGGTATTTCAAGCTCACTTTCCACAATAAGTACAGGGATCTCATCACTGTGTCTTACATCAAACATGTCTTGGAAGAGGGGAAGGAAATTGCCTTGAGAAACAGACAAAGGAAGTTGTACACCAACAACCCCAGCAGTGGTTGGTATGGTTACAAACAGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCAACGTTTGAGACTCTTGCAATGGAGCaaaggaagaaggaagagaTCATCAATGACCTTGTTAAGTTCAGGAATGGGAAGGATTACTATGCCAAGATTGGGAAGGCTTGGAAGCGTGGCTACCTACTCTATGGTCCTCCTGGGACTGGTAAGTCTACTATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTCTATGATCTTGAGTTGACTGCAGTCAAGGACAACACTGAGTTGAGGAAGTTGTTGATTGAAACTTCTAGTAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCACTTGATCTCACCGGTCAGAGGAACATGAAGAAGGAAAGGGGTGAGGAAGAAGAACCAAAAGATCCTAGTAAAAAAGATGAAGAGGAGGTTAACAAGATTAGCAAGGTAACTCTGTCTGGgttgttgaattttattgatGGTATTTGGTCAGCATGTGGGGGAGAGAGGATTATTGTTTTCACAACCAACTTTGTGGACAAGCTTGATCCTGCTCTTATTAGGACAGGTAGGATGGACAAACACATTGAATTGTCCTATTGCCGCTTTGAAGCATTCAAGGTGCTTGCCAAGAACTACTTGGATGTTGACTCGCATGATTCGTTTGCTAGAATTGCCAATTTGTTGGAAGTGACCAATGTGATCCCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTCAGTGAATGAAGATGTAGAGACTTGCTTGCTGAATTTGATTCAAGCTCTTGAGAAAAAGGtcgtagaagaagaagaagcagggTTGAATGAAGAAAATGACAAGGAGGAACCTACTCAgcaggagaaaaaaaataatgggcACACTGTGGAAGATGTGAAGGAAAATGGGTTCATCCTTTGA 1497 0.4175 MGELWTQMGSLMATIMFVYAMFERFFPAALRDTLQIHTQKVVNLLYPYVQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSMDDDEEVTDEFQGVKLWWAASKTATNAHAYSFSYYTPPDGKRYFKLTFHNKYRDLITVSYIKHVLEEGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMEQRKKEEIINDLVKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRNMKKERGEEEEPKDPSKKDEEEVNKISKVTLSGLLNFIDGIWSACGGERIIVFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFKVLAKNYLDVDSHDSFARIANLLEVTNVIPADVAENLMPKSVNEDVETCLLNLIQALEKKVVEEEEAGLNEENDKEEPTQQEKKNNGHTVEDVKENGFIL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0511 498 Pfam ATPase family associated with various cellular activities (AAA) 247 391 IPR003959 GO:0005524|GO:0016887
Ssu3g0511 498 PANTHER BCS1 AAA-TYPE ATPASE 3 483 - -
Ssu3g0511 498 MobiDBLite consensus disorder prediction 462 498 - -
Ssu3g0511 498 Gene3D - 196 388 IPR027417 -
Ssu3g0511 498 Pfam Domain associated at C-terminal with AAA 26 120 IPR025753 -
Ssu3g0511 498 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Ssu3g0511 498 MobiDBLite consensus disorder prediction 314 334 - -
Ssu3g0511 498 Gene3D - 389 462 - -
Ssu3g0511 498 MobiDBLite consensus disorder prediction 471 489 - -
Ssu3g0511 498 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 3 483 - -
Ssu3g0511 498 Coils Coil 452 472 - -
Ssu3g0511 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 438 IPR027417 -
Ssu3g0511 498 CDD AAA 243 392 - -
Ssu3g0511 498 SMART AAA_5 242 394 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0511 Ssu-Chr3 12702624 12704120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0511 217 390 Calmodulin-binding Proteins AT3G56690 27.374 5.69e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0511 - - gmx:100777731 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0511 3 12702624 12704120 Ssu3g0511 3 12702624 12704120 ECH