Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g0511 | ATGGGGGAACTATGGACACAAATGGGCTCATTAATGGCCACAATCATGTTTGTGTATGCCATGTTTGAGCGTTTTTTCCCGGCTGCACTTCGTGACACTCTTCAAATCCACACTCAGAAAGTGGTGAACCTGTTGTACCCTTATGTCCAAATCACCTTCCCTGAGTTCTCAGGTGAGAGGCTCAAGCGAAGTGAGGCTTACACTGCCATCCAAACCTACCTCAGTGAGAACTCTTCCCAGCTAGCCAAAAGACTCAAAGCTGAAGTGGTGAAAGATAGCCAGAACCCTCTGGTGCTTAGCATGGACGATGATGAAGAGGTCACTGATGAGTTCCAAGGTGTGAAGCTTTGGTGGGCTGCAAGCAAAACTGCCACTAACGCTCATGCATATTCCTTCTCTTATTACACTCCCCCAGATGGGAAGAGGTATTTCAAGCTCACTTTCCACAATAAGTACAGGGATCTCATCACTGTGTCTTACATCAAACATGTCTTGGAAGAGGGGAAGGAAATTGCCTTGAGAAACAGACAAAGGAAGTTGTACACCAACAACCCCAGCAGTGGTTGGTATGGTTACAAACAGTCAAAGTGGAGCCACATAGTGTTTGAGCACCCTGCAACGTTTGAGACTCTTGCAATGGAGCaaaggaagaaggaagagaTCATCAATGACCTTGTTAAGTTCAGGAATGGGAAGGATTACTATGCCAAGATTGGGAAGGCTTGGAAGCGTGGCTACCTACTCTATGGTCCTCCTGGGACTGGTAAGTCTACTATGATAGCTGCAATGGCTAATTTCATGAACTATGATGTCTATGATCTTGAGTTGACTGCAGTCAAGGACAACACTGAGTTGAGGAAGTTGTTGATTGAAACTTCTAGTAAGGCTATTATAGTTGTGGAAGACATTGATTGCTCACTTGATCTCACCGGTCAGAGGAACATGAAGAAGGAAAGGGGTGAGGAAGAAGAACCAAAAGATCCTAGTAAAAAAGATGAAGAGGAGGTTAACAAGATTAGCAAGGTAACTCTGTCTGGgttgttgaattttattgatGGTATTTGGTCAGCATGTGGGGGAGAGAGGATTATTGTTTTCACAACCAACTTTGTGGACAAGCTTGATCCTGCTCTTATTAGGACAGGTAGGATGGACAAACACATTGAATTGTCCTATTGCCGCTTTGAAGCATTCAAGGTGCTTGCCAAGAACTACTTGGATGTTGACTCGCATGATTCGTTTGCTAGAATTGCCAATTTGTTGGAAGTGACCAATGTGATCCCTGCTGATGTTGCTGAGAATCTCATGCCTAAGTCAGTGAATGAAGATGTAGAGACTTGCTTGCTGAATTTGATTCAAGCTCTTGAGAAAAAGGtcgtagaagaagaagaagcagggTTGAATGAAGAAAATGACAAGGAGGAACCTACTCAgcaggagaaaaaaaataatgggcACACTGTGGAAGATGTGAAGGAAAATGGGTTCATCCTTTGA | 1497 | 0.4175 | MGELWTQMGSLMATIMFVYAMFERFFPAALRDTLQIHTQKVVNLLYPYVQITFPEFSGERLKRSEAYTAIQTYLSENSSQLAKRLKAEVVKDSQNPLVLSMDDDEEVTDEFQGVKLWWAASKTATNAHAYSFSYYTPPDGKRYFKLTFHNKYRDLITVSYIKHVLEEGKEIALRNRQRKLYTNNPSSGWYGYKQSKWSHIVFEHPATFETLAMEQRKKEEIINDLVKFRNGKDYYAKIGKAWKRGYLLYGPPGTGKSTMIAAMANFMNYDVYDLELTAVKDNTELRKLLIETSSKAIIVVEDIDCSLDLTGQRNMKKERGEEEEPKDPSKKDEEEVNKISKVTLSGLLNFIDGIWSACGGERIIVFTTNFVDKLDPALIRTGRMDKHIELSYCRFEAFKVLAKNYLDVDSHDSFARIANLLEVTNVIPADVAENLMPKSVNEDVETCLLNLIQALEKKVVEEEEAGLNEENDKEEPTQQEKKNNGHTVEDVKENGFIL | 498 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g0511 | 498 | Pfam | ATPase family associated with various cellular activities (AAA) | 247 | 391 | IPR003959 | GO:0005524|GO:0016887 | |
Ssu3g0511 | 498 | PANTHER | BCS1 AAA-TYPE ATPASE | 3 | 483 | - | - | |
Ssu3g0511 | 498 | MobiDBLite | consensus disorder prediction | 462 | 498 | - | - | |
Ssu3g0511 | 498 | Gene3D | - | 196 | 388 | IPR027417 | - | |
Ssu3g0511 | 498 | Pfam | Domain associated at C-terminal with AAA | 26 | 120 | IPR025753 | - | |
Ssu3g0511 | 498 | ProSitePatterns | AAA-protein family signature. | 362 | 380 | IPR003960 | GO:0005524|GO:0016887 | |
Ssu3g0511 | 498 | MobiDBLite | consensus disorder prediction | 314 | 334 | - | - | |
Ssu3g0511 | 498 | Gene3D | - | 389 | 462 | - | - | |
Ssu3g0511 | 498 | MobiDBLite | consensus disorder prediction | 471 | 489 | - | - | |
Ssu3g0511 | 498 | PANTHER | NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 3 | 483 | - | - | |
Ssu3g0511 | 498 | Coils | Coil | 452 | 472 | - | - | |
Ssu3g0511 | 498 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 99 | 438 | IPR027417 | - | |
Ssu3g0511 | 498 | CDD | AAA | 243 | 392 | - | - | |
Ssu3g0511 | 498 | SMART | AAA_5 | 242 | 394 | IPR003593 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g0511 | Ssu-Chr3 | 12702624 | 12704120 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g0511 | 217 | 390 | Calmodulin-binding Proteins | AT3G56690 | 27.374 | 5.69e-11 | 63.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g0511 | - | - | gmx:100777731 | 924.465 |