Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0500 ATGGGGTTTAGGAATAATGCAATTCAGGCCGGGAGTTTGGATGTGGGAAAGTCAAAGGTAAAGATGCAAAAGGATGGTGCTGAAAGGGAAATTGGGTGCTGTGTTAAATTCTGTTTCATTGGGAGCTGCATACCTTCAAGATCAAAGGTTGATAACTCCATAAGTGGCACTAGTGCTCACAGTgtGGAAAAAACATCTGCATGTAAGAAAAGCAAGAAGGAAATAAATGCTCCTCCAGGGTCCTCTACAACAACCAGTAATGCAGAAAGTATCCCTTCCACTCCAAAAGTCAGTGAGGAGTTGAAGGTTTCTTCTCGTTTGAGAAAATTTACATTCAACGAGCTTAAGTCGGCTACGAGGAATTTCAGACCAGAGAGTCTTCTTGGTGAGGGAGGGTTTGGTTGTGTGTTCAAGGGTTGGATTGAGGAAAATGGAACTGCACCTGTGAAACCTGGTACTGGACTAACTGTTGCGGTCAAGACCCTCAACCATGACGGACTTCAGGGTCACAAAGAGTGGCTTGCAGAGTTAGACATTCTCGGAGACCTTGTCCATTCGAATCTGGTCAAATTGATTGGTTTCTGTATTGAAGATGACCAAAGATTATTGGTTTATGAATGTATGCCCCGTGGAAGTTTGGAGAACCACCTCTTCAGAAAAGGGTCGTTGCCTCTGCCTTGGTCTATCAGAATGAAAATTGCACTTGGTGCTGCAAAAGGTCTTACTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAATGCAAAGCTCTCTGATTTTGGACTTGCCAAAGATGGTCCTGAAGGGGAAAAGACACACATATCAACAAGAGTCATGGGAACATATGGTTATGCAGCTCCTGAGTATGTGATGACTGGACATTTGACATCAAAAAGTGATGTCTATAGTTTTGGAGTAGTGCTACTTGAAATGCTTACTGGCCGGCGATCTATAGATAAGAATAGACCAAATGGGGAACACAACCTTGTGGAGTGGGCAAGGCCGGTACTTGGGGACCGGAGGATGTTATTACGGATAATTGACCCTCGCCTTGAAGGTCACTTCTCTGTTAAAGGGGCGCAGAAGGCAGCGCAGCTGGCTGCTCAATGCCTTAGTCGTGATCCAAAATCCAGACCTATGATGAGTGAAGTTGTTCAAACTCTGAAGCCTTTGCAAAACCTCAAGGATATGGCTATCTCATCTTATCACTTCCAGGTTGCGCGAGTAGACCGTACCATGTCCATGCCAACTTCTAAAAATGGTATGCAAGCACAGTTAACATCTTTATCAAGGAAGGGTCAACCTGTAAGGATGTTGTCGAGTCCAAAAGGTCCTCATGGTTCTCCATATCATCACTATGTCAAGTCACCAAAACCTAATGGATAA 1431 0.4382 MGFRNNAIQAGSLDVGKSKVKMQKDGAEREIGCCVKFCFIGSCIPSRSKVDNSISGTSAHSVEKTSACKKSKKEINAPPGSSTTTSNAESIPSTPKVSEELKVSSRLRKFTFNELKSATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAELDILGDLVHSNLVKLIGFCIEDDQRLLVYECMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLTFLHEEAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDGPEGEKTHISTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKNRPNGEHNLVEWARPVLGDRRMLLRIIDPRLEGHFSVKGAQKAAQLAAQCLSRDPKSRPMMSEVVQTLKPLQNLKDMAISSYHFQVARVDRTMSMPTSKNGMQAQLTSLSRKGQPVRMLSSPKGPHGSPYHHYVKSPKPNG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0500 476 ProSitePatterns Protein kinases ATP-binding region signature. 128 160 IPR017441 GO:0005524
Ssu3g0500 476 MobiDBLite consensus disorder prediction 431 476 - -
Ssu3g0500 476 PANTHER OS01G0588500 PROTEIN-RELATED 57 468 - -
Ssu3g0500 476 Pfam Protein kinase domain 125 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0500 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Ssu3g0500 476 SUPERFAMILY Protein kinase-like (PK-like) 96 403 IPR011009 -
Ssu3g0500 476 Gene3D Transferase(Phosphotransferase) domain 1 208 426 - -
Ssu3g0500 476 MobiDBLite consensus disorder prediction 76 97 - -
Ssu3g0500 476 MobiDBLite consensus disorder prediction 431 450 - -
Ssu3g0500 476 MobiDBLite consensus disorder prediction 61 97 - -
Ssu3g0500 476 CDD STKc_IRAK 128 406 - -
Ssu3g0500 476 PANTHER RECEPTOR-LIKE KINASE PLANT 57 468 - -
Ssu3g0500 476 ProSiteProfiles Protein kinase domain profile. 122 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g0500 476 Gene3D Phosphorylase Kinase; domain 1 102 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0500 Ssu-Chr3 12445361 12448895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0500 80 419 Glycoside Hydrolase AT3G07070 51.705 3.45e-117 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu3g0500 Pkinase 6.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0500 - - gmx:100802866 912.909
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g2340 8 60917904 60923257 Ssu3g0500 3 12445361 12448895 PCT