Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0496 ATGGCAGGAGGTGCAAGTAAGGTTACTTTTATCTTCTTGGCTGCTTTTGCCATTACTATTCCCTGCCTTGAGGCGGGCATTGCTGAGTTTGACGATTATCTCAAAGCACAAGCTGATGAGGCCCGCGAAATCGCTCTCGAGTCCTACGTGCCCGACCCTGTAAACATTACAGCCGACCTCAATATGCACGTTCATTCGGCACTGGGGGAGGCAATAAAGGAGCAATCAAACAGCACAAGGAGGGAACTAAGTCAGAAATATAATGGACCATGCTTGGCCCAGAACCCAATTGATCGTTGTTGGAGGTGCAAGAAAGACTGGGCCGAAGACCGTTTTAGGTTAGCCAAGTGCGTCAAGGGTTTCGGAAGAAAGGCCGTGGGAGGACTGGGTGGCAAAATCTACGTAGTCACTGATCCCTCCGATGATGACATGGTTAACCCCAAACCTGGGACTCTTAGGTTCGGTGCTGTTCAAAAGGAACCACTGTGGATCATATTTGAACGTAGCATGGTCATCACGTTGAAGCAGGAGTTGTTGGTTGCGTCGGACAAAACAATCGATGGTCGTGGGGCCCATGTGGTGATCAAGGACGGTGCCGGCATTACCATGCAATATGTGAACAACGTCATCATCCACGGGCTTCACATCCGTAAGATCAAGTCCATGGATGGTGGCATGATGAGGGACTCTTCGAACCACGTTGGAATAAGAACCAGGAGCGACGGGGATGCCATCTCCATTTTTGGTTCTTCAAACATTTGGATCGATCATCTTTCACTATCTCAATGCGAGGATGGTCTCGTCGATGTTATCCAGGGTTCCACCGGAATCACCATCTCAAATTGCCACATGACCAAACATAACGATGTGATGCTGTTTGGAGCTAGCGATACCTTCCCCGGTGACAGGATAATGCAGATTACAGTGGCATTCAACCATTTTGGGCAGGGGCTGATCCAGAGAATGCCCAGATGCAGATGGGGTTTTTTCCACGTGTTGAACAACGACTACACTCACTGGCTGATGTACGCAATTGGTGGCAGCTCAGGGCCAACAATTCTTAGCCAGGGAAACCGCTTCATTGCACCCAACAACGATGCTGCCAAGGAAATCACACACAGGGACTATGCAGCACGTGCTGTGTGGGACAAATGGCAGTGGAGATCAGAGAACGACCTCTTCATGAATGGGGCAACGTTTCTTCAGTCAGGAGAACCTCTTGGGAAGCTACCCTTCAGCAAAGGGTTACTAATGAAACCTAGACATGGGTCAGAAGCCAACAGGCTAGCACGCTTTTCTGGGGCCCTCAATTGCAAGGTGGGTAAGCCTTGCTAG 1335 0.4981 MAGGASKVTFIFLAAFAITIPCLEAGIAEFDDYLKAQADEAREIALESYVPDPVNITADLNMHVHSALGEAIKEQSNSTRRELSQKYNGPCLAQNPIDRCWRCKKDWAEDRFRLAKCVKGFGRKAVGGLGGKIYVVTDPSDDDMVNPKPGTLRFGAVQKEPLWIIFERSMVITLKQELLVASDKTIDGRGAHVVIKDGAGITMQYVNNVIIHGLHIRKIKSMDGGMMRDSSNHVGIRTRSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGITISNCHMTKHNDVMLFGASDTFPGDRIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYAARAVWDKWQWRSENDLFMNGATFLQSGEPLGKLPFSKGLLMKPRHGSEANRLARFSGALNCKVGKPC 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0496 444 PANTHER PECTATE LYASE 5 444 - -
Ssu3g0496 444 Pfam Pectate lyase 176 360 IPR002022 -
Ssu3g0496 444 Gene3D - 94 437 IPR012334 -
Ssu3g0496 444 SMART amb_all 169 366 IPR002022 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Ssu3g0496 444 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Ssu3g0496 444 SUPERFAMILY Pectin lyase-like 95 432 IPR011050 -
Ssu3g0496 444 PANTHER PECTATE LYASE 18-RELATED 5 444 IPR045032 GO:0030570
Ssu3g0496 444 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0496 Ssu-Chr3 12384665 12387730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0496 6 444 Polysaccharide Lyase AT5G15110 53.419 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0496 K01728 - gmx:100780236 766.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0496 3 12384665 12387730 Ssu1g2145 1 61131580 61133846 ECH
Ssu3g0496 3 12384665 12387730 Ssu3g0496 3 12384665 12387730 ECH
Ssu3g0496 3 12384665 12387730 Ssu8g2336 8 60860629 60863441 ECH