Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0495 ATGACAATGATGAAAGAGAATATTGAAGTGAGCCTTGGGAGGAGCCAAATGTCCATGGCAGAAGGTGGGTTACAAGGAAAACGGTGTGCTAAGAGACGAAGAAGAGAGGTTGCAGCAGTAGCAAGCGGTGGTGATGATAACCACCACCAGCAGTTACCACAACAAGAAGTTGGTGAAAATTCTACAATAAACACTACAAAGAGAAGCTCAAAATTTCGCGGTGTTAGCAGACACAGATGGACGGGTCGATTTGAAGCTCACTTGTGGGACAAACTTTCTTGGAAcataacacaaaagaaaaaagggaaacaagTTTACCTTGGGGCTTATGATGAAGAACAATCTGCTGCCAGAGCATATGATTTAGCTGCACTTAAGTATTGGGGAACATCAACTTTCACCAATTTTCCGATATCAGATTAcgagaaagagatagaaataaTGCAGACTATGACCAAAGAGGAGTATTTGGCCACTTTAAGGAGAAAGAGCAGTGGCTTTTCAAGAGGCGTATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGAATAGGAAGGGTTTTTGGAAACAAATATCTCTACCTTGGCACCTACAGCACCCAAGAGGAAGCTGCGCATGCTTATGACTTAGCAGCCATTGAGTACAGAGGAATTCATGCTGTAACAAACTTTGATTTGAGCACTTACATAAAATGGTTAAAGCCTTCAGGAGGAAGCACCCCAGAAGCAGAACTTGAATCACATGCAGTACTAGAGTCTCAAAAGGTGGCATCCCCATCTAACTATGCTCAAACAGAAGAGTCAAAGTCTTTTGCCCTTCACAACAGTTTTTTCAGTCTAGATTCTCTGGATTCCCCTGTAAAGCAAGAAAATTTTGGAAACAAAACCTACCAATTCTCAAGCAATAAGTCATCTTCTCCCACTGCACTTGGCCTTCTTCTCCGCTCTTCGTTATTTAGAGAATTAGTTGAAAAGAATTCAAATGTGTCTGTTGATGAAGCTGATGGGGAAGTCACAAAGGATCAACAGCCACAAATAGCGAGTGATGATGAGCTGGGTGGAATATTCTATGATAGCATTGGTGATATCCCATTTGTTTGTGACCCCAATAGATACAACTTGGAATTGCAAGAAAGAGACCTGCACTCAATATTTTGA 1176 0.4048 MTMMKENIEVSLGRSQMSMAEGGLQGKRCAKRRRREVAAVASGGDDNHHQQLPQQEVGENSTINTTKRSSKFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQVYLGAYDEEQSAARAYDLAALKYWGTSTFTNFPISDYEKEIEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAAHAYDLAAIEYRGIHAVTNFDLSTYIKWLKPSGGSTPEAELESHAVLESQKVASPSNYAQTEESKSFALHNSFFSLDSLDSPVKQENFGNKTYQFSSNKSSSPTALGLLLRSSLFRELVEKNSNVSVDEADGEVTKDQQPQIASDDELGGIFYDSIGDIPFVCDPNRYNLELQERDLHSIF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0495 391 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 376 - -
Ssu3g0495 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 376 - -
Ssu3g0495 391 MobiDBLite consensus disorder prediction 47 63 - -
Ssu3g0495 391 SUPERFAMILY DNA-binding domain 70 139 IPR016177 GO:0003677
Ssu3g0495 391 ProSiteProfiles AP2/ERF domain profile. 71 137 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 ProSiteProfiles AP2/ERF domain profile. 173 231 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 SMART rav1_2 173 237 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 SMART rav1_2 71 143 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 Gene3D AP2/ERF domain 172 233 IPR036955 GO:0003700|GO:0006355
Ssu3g0495 391 Gene3D AP2/ERF domain 70 139 IPR036955 GO:0003700|GO:0006355
Ssu3g0495 391 SUPERFAMILY DNA-binding domain 172 233 IPR016177 GO:0003677
Ssu3g0495 391 CDD AP2 70 139 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 MobiDBLite consensus disorder prediction 37 63 - -
Ssu3g0495 391 Pfam AP2 domain 172 223 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 Pfam AP2 domain 70 129 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 CDD AP2 172 233 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Ssu3g0495 391 PRINTS Ethylene responsive element binding protein signature 213 233 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0495 Ssu-Chr3 12366609 12368647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0495 67 277 AP2-EREBP Transcription Factor Family AT5G57390 58.796 1.22e-84 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Ssu3g0495 AP2 1.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0495 - - gmx:100779867 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0495 3 12366609 12368647 Ssu3g0495 3 12366609 12368647 ECH