Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0492 ATGTACGGATTCGAAGCTCTCACATTCAACATCCACGGCGGTTTCCTCGAGGCCATCGTCAGGGGCCACCGCTCCGGCCTCCTCACCACCGCAGATTACAACAACCTCTGCCAATGCGAAACCCTCGACGACATCAAGATGCACCTCTCCGCCACCGAGTACGGCCCTTACCTCCAAAACGAACCTTCTCCATTGCATACCACCACGATTGTGGAGAAGTGTACTCTTAAGCTGGTTGATGATTACAAGAACATGCTATGCCAAGCACGGAACCCTTGTCAACCTTTTAGAATATATCACGTTGAGCTAACggactaa 318 0.5031 MYGFEALTFNIHGGFLEAIVRGHRSGLLTTADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKNMLCQARNPCQPFRIYHVELTD 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0492 105 SUPERFAMILY V-type ATP synthase subunit C 15 94 IPR036079 -
Ssu3g0492 105 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 103 IPR044911 -
Ssu3g0492 105 PANTHER V-TYPE PROTON ATPASE SUBUNIT 1 99 - -
Ssu3g0492 105 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 1 99 IPR016727 GO:0033179|GO:0046961|GO:1902600
Ssu3g0492 105 Pfam ATP synthase (C/AC39) subunit 16 93 IPR002843 GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0492 Ssu-Chr3 11899278 11900199 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0492 1 99 Primary Pumps ATPases(2) AT3G28715 87.879 1.45e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0492 K02146 - gmx:100800553 193.356