Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0490 ATGTACGGATTCGAAGCTCTCACATTCAACATCCACGGCGGTTTCCTCGAGGCCATCGTCAGGGGCCACCGCTCCGGCCTCCTCACCACCGCCGATTACAACAACCTCTGCCAATGCGAAACCCTCGACGACATCAAGATGCACCTCTCCGCCACCGAGTACGGCCCTTACCTCCAAAACGAACCTTCTCCATTGCATACCACCACGATTGTGGAGAAGTGTACTCTTAAGCTGGTTGATGATTACAAGAACATGCTATGCCAAGCCACGGAACCCCTGTCAACCTTTTTAGAATATATCACGCAACTCAGCTTACATGTACGGGCATTAGCTCTGACTCCTTGTGTAAAAGTTGAATTCAAATCAGAATTGCTCTGGCTGATGAGTTTTGTGTAG 396 0.4975 MYGFEALTFNIHGGFLEAIVRGHRSGLLTTADYNNLCQCETLDDIKMHLSATEYGPYLQNEPSPLHTTTIVEKCTLKLVDDYKNMLCQATEPLSTFLEYITQLSLHVRALALTPCVKVEFKSELLWLMSFV 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0490 131 Pfam ATP synthase (C/AC39) subunit 16 101 IPR002843 GO:0046961
Ssu3g0490 131 PANTHER V-TYPE PROTON ATPASE SUBUNIT 1 101 - -
Ssu3g0490 131 Gene3D ATP synthase (C/AC39) subunit, domain 3 14 112 IPR044911 -
Ssu3g0490 131 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT AC39 1 101 IPR016727 GO:0033179|GO:0046961|GO:1902600
Ssu3g0490 131 SUPERFAMILY V-type ATP synthase subunit C 15 101 IPR036079 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0490 Ssu-Chr3 11756820 11757881 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0490 1 100 Primary Pumps ATPases(2) AT3G28715 94.000 1.23e-67 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0490 K02146 - gmx:100800553 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g0490 3 11756820 11757881 Ssu3g0490 3 11756820 11757881 ECH