Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g0488 ATGTCAAAAATGTCTATTCCTACTGGTCCAGagatagaagagaagagagttACTTCCATTTGCTATGAAGATGATTTTGGTACTCAAAAGGAAGATAAATTCAAATCTGCTAAAGTTGAGATGGGTGAggtgaagaaagaaaatgggagATTGAAGATGATGTTAGAGCGAGTAGAAAAGGACTACCACTCCCTTCAACTCCGTTTCTTTGACATCCTTCACAAAGACGTTTCAAAGAAGGGTGTAGCTGATTCATCTACTTCCCATGATGAAACTGAAGAGCCTGAGCTTGTGTCACTTTGCCTTGGAAGGAGTCCAAAGGAGTCTAAGAAGGAAGCAAGAATTGGAGACTCTaacaaaccaaaagaaaaagatgggGGACCCAACCTAACTCTTGGATTAGACTCCAAACACCTGCTGTCAATGGAGGTTGTGTCCGATTCGAGTCCCATGAACAGCTCAGAAGAACCAAAGGAAGCGGAAGCAGAGGGAACATTGTCACCAAATCAATCAGCAAAAATGATGAATGTAAACGAGAACATGTCAGATCAAATGCCAGCCAAGAGAGCCAGGGTGTCTGTGAGAGCTAGATGTGATACTCCCACGATGAATGATGGGTGCCAGTGGAGGAAATATGGACAGAAGATAGCAAAGGGAAATCCATGTCCAAGGGCATACTATCGTTGCACAGTTGCACCAACATGCCCAGTCAGGAAGCagGTGCAAAGGTGTGCTGAGGACTTGTCGATCTTAATCACCACGTATGAAGGAACCCATAACCACCCACTTCCAGTTTCAGCCACAGCCATGGCTTCCACCACTTCTGCTGCTGCTTCCATGCTGTTGTCAGGTTCTTCAACATCTCAACCTGCAGGCCACAGTTCTGCACCTTTTAGAAATTCTCCCACCACACTACTCAATGGTCTGAGTTTCAGTCACCAGTTTGATGAATCAAGAGCCAAACAAGTCTTCTCACCACCAAACCTTGCCTCACCACATATGTTCCCAACAATCACTCTAGACCTgacttcttcagcttcttcctCCTCATCAACTCAATTCCATCATCGCTTAAATTCAAGCATGGCTTCAATTTCAAACCGAAAATTTTCTCCAGCTAATCTCAGCTTTTGTTCCCCAGAGAATAACTTCATACCATCCATTTGGGGTAAGGTGTTCCCTGATAATGGCACAACCACAACACCAATTAGCAAAGTCCCCACAAGGCCAGTTACGCAGGCAAATCATTACCAAGAACATTTCTACCAACAATGCACAACGAACCAAACTCCGTCCAGAGAAGCTTTGGCAGAAACAATAACCAAAGCAATCAGCACAGACCCGAGTCTTCGTTCAGTAATAGCTGCTGCAGTTTCATCAATAGTGGGGCATGGATCAAAGTCATCAAACAGTGGGAACCAAGAGGGAGCAGAAAATGTTCTTGGTTCAGGGTTGAACCTAAAACTGGGGGAGCATCTTCAATTGGCTTCACCCAATCCCTTGAACCAAAATGGGAAAGGATGCTTAACAGGATACCTCAAAAATTTGTCCTCTACAAGTTCTGAGGCAGGAAACTTCATTCTTCTCCAACCACCActgccattttctttctccAAGAGTGGCGCAAATCAGATCAACAATTATGTTCCAGAAATGAACACGCATCATTag 1671 0.4165 MSKMSIPTGPEIEEKRVTSICYEDDFGTQKEDKFKSAKVEMGEVKKENGRLKMMLERVEKDYHSLQLRFFDILHKDVSKKGVADSSTSHDETEEPELVSLCLGRSPKESKKEARIGDSNKPKEKDGGPNLTLGLDSKHLLSMEVVSDSSPMNSSEEPKEAEAEGTLSPNQSAKMMNVNENMSDQMPAKRARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPTCPVRKQVQRCAEDLSILITTYEGTHNHPLPVSATAMASTTSAAASMLLSGSSTSQPAGHSSAPFRNSPTTLLNGLSFSHQFDESRAKQVFSPPNLASPHMFPTITLDLTSSASSSSSTQFHHRLNSSMASISNRKFSPANLSFCSPENNFIPSIWGKVFPDNGTTTTPISKVPTRPVTQANHYQEHFYQQCTTNQTPSREALAETITKAISTDPSLRSVIAAAVSSIVGHGSKSSNSGNQEGAENVLGSGLNLKLGEHLQLASPNPLNQNGKGCLTGYLKNLSSTSSEAGNFILLQPPLPFSFSKSGANQINNYVPEMNTHH 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g0488 556 MobiDBLite consensus disorder prediction 105 124 - -
Ssu3g0488 556 Gene3D WRKY domain 188 265 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0488 556 Coils Coil 41 61 - -
Ssu3g0488 556 PANTHER WRKY TRANSCRIPTION FACTOR 72-RELATED 33 545 - -
Ssu3g0488 556 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0488 556 MobiDBLite consensus disorder prediction 81 97 - -
Ssu3g0488 556 SUPERFAMILY WRKY DNA-binding domain 196 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu3g0488 556 MobiDBLite consensus disorder prediction 81 171 - -
Ssu3g0488 556 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 545 IPR044810 GO:0003700
Ssu3g0488 556 Pfam WRKY DNA -binding domain 204 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu3g0488 556 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g0488 Ssu-Chr3 11637411 11640051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g0488 41 463 WRKY Transcription Factor Family AT5G15130 44.201 2.29e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu3g0488 WRKY 6.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g0488 - - gmx:100792084 812.757